Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03450 and ABZR87_RS03455 are separated by 16 nucleotides ABZR87_RS03455 and ABZR87_RS03460 are separated by 22 nucleotides
ABZR87_RS03450: ABZR87_RS03450 - type II secretion system secretin GspD, at 719,048 to 721,465
_RS03450
ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038
_RS03455
ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272
_RS03460
Position (kb) 721
722
723
724 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 720.756 kb on - strand, within ABZR87_RS03450 at 720.756 kb on - strand, within ABZR87_RS03450 at 721.016 kb on + strand, within ABZR87_RS03450 at 721.017 kb on - strand, within ABZR87_RS03450 at 721.017 kb on - strand, within ABZR87_RS03450 at 721.017 kb on - strand, within ABZR87_RS03450 at 721.144 kb on + strand, within ABZR87_RS03450 at 721.144 kb on + strand, within ABZR87_RS03450 at 721.181 kb on + strand, within ABZR87_RS03450 at 721.181 kb on + strand, within ABZR87_RS03450 at 721.182 kb on - strand, within ABZR87_RS03450 at 721.182 kb on - strand, within ABZR87_RS03450 at 721.182 kb on - strand, within ABZR87_RS03450 at 721.187 kb on + strand, within ABZR87_RS03450 at 721.187 kb on + strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.298 kb on + strand at 721.298 kb on + strand at 721.298 kb on + strand at 721.298 kb on + strand at 721.298 kb on + strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.337 kb on - strand at 721.434 kb on - strand at 721.557 kb on + strand at 721.691 kb on - strand, within ABZR87_RS03455 at 721.734 kb on + strand, within ABZR87_RS03455 at 721.734 kb on + strand, within ABZR87_RS03455 at 721.734 kb on + strand, within ABZR87_RS03455 at 721.735 kb on - strand, within ABZR87_RS03455 at 721.735 kb on - strand, within ABZR87_RS03455 at 721.735 kb on - strand, within ABZR87_RS03455 at 721.886 kb on + strand, within ABZR87_RS03455 at 721.887 kb on - strand, within ABZR87_RS03455 at 721.887 kb on - strand, within ABZR87_RS03455 at 722.113 kb on + strand, within ABZR87_RS03455 at 722.113 kb on + strand, within ABZR87_RS03455 at 722.213 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.317 kb on - strand, within ABZR87_RS03455 at 722.382 kb on + strand, within ABZR87_RS03455 at 722.382 kb on + strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.839 kb on - strand, within ABZR87_RS03455 at 722.859 kb on + strand, within ABZR87_RS03455 at 722.859 kb on + strand, within ABZR87_RS03455 at 722.860 kb on - strand, within ABZR87_RS03455 at 722.860 kb on - strand, within ABZR87_RS03455 at 722.860 kb on - strand, within ABZR87_RS03455 at 723.036 kb on + strand at 723.036 kb on + strand at 723.036 kb on + strand at 723.036 kb on + strand at 723.037 kb on - strand at 723.055 kb on + strand at 723.055 kb on + strand at 723.056 kb on - strand at 723.056 kb on - strand at 723.076 kb on + strand at 723.352 kb on + strand, within ABZR87_RS03460 at 723.352 kb on + strand, within ABZR87_RS03460 at 723.352 kb on + strand, within ABZR87_RS03460 at 723.353 kb on - strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.521 kb on - strand, within ABZR87_RS03460 at 723.572 kb on - strand, within ABZR87_RS03460 at 723.625 kb on + strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.650 kb on + strand, within ABZR87_RS03460 at 723.650 kb on + strand, within ABZR87_RS03460 at 723.650 kb on + strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.797 kb on + strand, within ABZR87_RS03460 at 723.798 kb on - strand, within ABZR87_RS03460 at 723.798 kb on - strand, within ABZR87_RS03460 at 723.860 kb on - strand, within ABZR87_RS03460
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 720,756 - ABZR87_RS03450 0.71 -2.3 720,756 - ABZR87_RS03450 0.71 -1.4 721,016 + ABZR87_RS03450 0.81 -2.5 721,017 - ABZR87_RS03450 0.81 +1.4 721,017 - ABZR87_RS03450 0.81 -1.8 721,017 - ABZR87_RS03450 0.81 -2.3 721,144 + ABZR87_RS03450 0.87 -1.9 721,144 + ABZR87_RS03450 0.87 -0.2 721,181 + ABZR87_RS03450 0.88 -1.2 721,181 + ABZR87_RS03450 0.88 -1.9 721,182 - ABZR87_RS03450 0.88 -0.8 721,182 - ABZR87_RS03450 0.88 -2.1 721,182 - ABZR87_RS03450 0.88 -2.6 721,187 + ABZR87_RS03450 0.88 -1.5 721,187 + ABZR87_RS03450 0.88 -0.4 721,188 - ABZR87_RS03450 0.89 -0.6 721,188 - ABZR87_RS03450 0.89 -3.3 721,188 - ABZR87_RS03450 0.89 -1.2 721,188 - ABZR87_RS03450 0.89 -1.9 721,188 - ABZR87_RS03450 0.89 -1.4 721,188 - ABZR87_RS03450 0.89 +0.0 721,188 - ABZR87_RS03450 0.89 -1.8 721,188 - ABZR87_RS03450 0.89 -1.4 721,188 - ABZR87_RS03450 0.89 -1.3 721,298 + -2.3 721,298 + +0.4 721,298 + -3.2 721,298 + +0.3 721,298 + -1.1 721,299 - -2.6 721,299 - -1.7 721,299 - -0.6 721,299 - -2.3 721,299 - -3.4 721,299 - -0.7 721,337 - -1.9 721,434 - -2.1 721,557 + -1.7 721,691 - ABZR87_RS03455 0.13 -2.0 721,734 + ABZR87_RS03455 0.16 -2.0 721,734 + ABZR87_RS03455 0.16 -2.5 721,734 + ABZR87_RS03455 0.16 -1.8 721,735 - ABZR87_RS03455 0.16 -0.9 721,735 - ABZR87_RS03455 0.16 -1.3 721,735 - ABZR87_RS03455 0.16 -0.9 721,886 + ABZR87_RS03455 0.26 -0.5 721,887 - ABZR87_RS03455 0.26 -0.3 721,887 - ABZR87_RS03455 0.26 -1.4 722,113 + ABZR87_RS03455 0.41 -2.5 722,113 + ABZR87_RS03455 0.41 -1.3 722,213 + ABZR87_RS03455 0.47 +2.7 722,316 + ABZR87_RS03455 0.54 -0.7 722,316 + ABZR87_RS03455 0.54 -1.0 722,316 + ABZR87_RS03455 0.54 -1.1 722,317 - ABZR87_RS03455 0.54 -1.4 722,382 + ABZR87_RS03455 0.58 +1.0 722,382 + ABZR87_RS03455 0.58 -2.1 722,383 - ABZR87_RS03455 0.58 -0.6 722,383 - ABZR87_RS03455 0.58 +0.2 722,383 - ABZR87_RS03455 0.58 -2.6 722,383 - ABZR87_RS03455 0.58 -2.4 722,383 - ABZR87_RS03455 0.58 -1.0 722,551 + ABZR87_RS03455 0.69 -0.8 722,551 + ABZR87_RS03455 0.69 -0.6 722,551 + ABZR87_RS03455 0.69 -0.4 722,551 + ABZR87_RS03455 0.69 -3.9 722,551 + ABZR87_RS03455 0.69 -2.6 722,552 - ABZR87_RS03455 0.69 +0.5 722,552 - ABZR87_RS03455 0.69 -2.4 722,552 - ABZR87_RS03455 0.69 -2.2 722,552 - ABZR87_RS03455 0.69 -1.4 722,671 + ABZR87_RS03455 0.76 -3.4 722,671 + ABZR87_RS03455 0.76 -1.0 722,671 + ABZR87_RS03455 0.76 -3.1 722,671 + ABZR87_RS03455 0.76 -1.4 722,839 - ABZR87_RS03455 0.87 -2.7 722,859 + ABZR87_RS03455 0.88 -0.7 722,859 + ABZR87_RS03455 0.88 -3.0 722,860 - ABZR87_RS03455 0.89 -0.4 722,860 - ABZR87_RS03455 0.89 +0.1 722,860 - ABZR87_RS03455 0.89 -2.2 723,036 + -1.0 723,036 + -1.6 723,036 + +2.0 723,036 + -0.6 723,037 - +0.7 723,055 + +0.4 723,055 + -0.0 723,056 - -2.5 723,056 - -2.1 723,076 + +0.1 723,352 + ABZR87_RS03460 0.24 -1.9 723,352 + ABZR87_RS03460 0.24 +0.9 723,352 + ABZR87_RS03460 0.24 -2.3 723,353 - ABZR87_RS03460 0.24 -1.5 723,451 + ABZR87_RS03460 0.32 -1.9 723,451 + ABZR87_RS03460 0.32 -3.8 723,451 + ABZR87_RS03460 0.32 -0.2 723,451 + ABZR87_RS03460 0.32 -1.6 723,452 - ABZR87_RS03460 0.32 -2.2 723,452 - ABZR87_RS03460 0.32 -3.5 723,452 - ABZR87_RS03460 0.32 -1.8 723,452 - ABZR87_RS03460 0.32 -0.4 723,520 + ABZR87_RS03460 0.38 -3.0 723,520 + ABZR87_RS03460 0.38 -0.8 723,520 + ABZR87_RS03460 0.38 -3.2 723,520 + ABZR87_RS03460 0.38 -0.7 723,520 + ABZR87_RS03460 0.38 -2.0 723,520 + ABZR87_RS03460 0.38 -3.8 723,521 - ABZR87_RS03460 0.38 -2.3 723,572 - ABZR87_RS03460 0.42 -2.2 723,625 + ABZR87_RS03460 0.47 -0.4 723,626 - ABZR87_RS03460 0.47 -3.4 723,626 - ABZR87_RS03460 0.47 -1.4 723,626 - ABZR87_RS03460 0.47 -2.0 723,626 - ABZR87_RS03460 0.47 -2.6 723,626 - ABZR87_RS03460 0.47 -1.4 723,650 + ABZR87_RS03460 0.49 -0.9 723,650 + ABZR87_RS03460 0.49 -0.9 723,650 + ABZR87_RS03460 0.49 -1.5 723,651 - ABZR87_RS03460 0.49 +0.6 723,651 - ABZR87_RS03460 0.49 -2.1 723,651 - ABZR87_RS03460 0.49 -1.6 723,651 - ABZR87_RS03460 0.49 -3.0 723,651 - ABZR87_RS03460 0.49 -3.5 723,651 - ABZR87_RS03460 0.49 -1.6 723,797 + ABZR87_RS03460 0.61 -1.5 723,798 - ABZR87_RS03460 0.61 -1.6 723,798 - ABZR87_RS03460 0.61 -1.1 723,860 - ABZR87_RS03460 0.66 -0.5
Or see this region's nucleotide sequence