Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02670 and ABZR87_RS02675 are separated by 7 nucleotides ABZR87_RS02675 and ABZR87_RS02680 are separated by 112 nucleotides
ABZR87_RS02670: ABZR87_RS02670 - c-type cytochrome biogenesis protein CcsB, at 566,497 to 567,684
_RS02670
ABZR87_RS02675: ABZR87_RS02675 - cytochrome c biogenesis protein ResB, at 567,692 to 569,899
_RS02675
ABZR87_RS02680: ABZR87_RS02680 - c-type cytochrome, at 570,012 to 570,671
_RS02680
Position (kb) 567
568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 567.618 kb on - strand at 567.618 kb on - strand at 569.971 kb on - strand at 569.971 kb on - strand at 570.031 kb on + strand at 570.031 kb on + strand at 570.031 kb on + strand at 570.031 kb on + strand at 570.031 kb on + strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.032 kb on - strand at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.090 kb on + strand, within ABZR87_RS02680 at 570.091 kb on - strand, within ABZR87_RS02680 at 570.091 kb on - strand, within ABZR87_RS02680 at 570.091 kb on - strand, within ABZR87_RS02680 at 570.091 kb on - strand, within ABZR87_RS02680 at 570.142 kb on + strand, within ABZR87_RS02680 at 570.143 kb on - strand, within ABZR87_RS02680 at 570.143 kb on - strand, within ABZR87_RS02680 at 570.143 kb on - strand, within ABZR87_RS02680 at 570.143 kb on - strand, within ABZR87_RS02680 at 570.164 kb on + strand, within ABZR87_RS02680 at 570.254 kb on - strand, within ABZR87_RS02680 at 570.328 kb on + strand, within ABZR87_RS02680 at 570.328 kb on + strand, within ABZR87_RS02680 at 570.328 kb on + strand, within ABZR87_RS02680 at 570.328 kb on + strand, within ABZR87_RS02680 at 570.328 kb on + strand, within ABZR87_RS02680 at 570.328 kb on + strand, within ABZR87_RS02680 at 570.329 kb on - strand, within ABZR87_RS02680 at 570.329 kb on - strand, within ABZR87_RS02680 at 570.329 kb on - strand, within ABZR87_RS02680 at 570.373 kb on + strand, within ABZR87_RS02680 at 570.373 kb on + strand, within ABZR87_RS02680 at 570.373 kb on + strand, within ABZR87_RS02680 at 570.374 kb on - strand, within ABZR87_RS02680 at 570.374 kb on - strand, within ABZR87_RS02680 at 570.439 kb on + strand, within ABZR87_RS02680 at 570.439 kb on + strand, within ABZR87_RS02680 at 570.439 kb on + strand, within ABZR87_RS02680 at 570.439 kb on + strand, within ABZR87_RS02680 at 570.440 kb on - strand, within ABZR87_RS02680 at 570.440 kb on - strand, within ABZR87_RS02680 at 570.440 kb on - strand, within ABZR87_RS02680 at 570.440 kb on - strand, within ABZR87_RS02680 at 570.440 kb on - strand, within ABZR87_RS02680 at 570.440 kb on - strand, within ABZR87_RS02680 at 570.512 kb on + strand, within ABZR87_RS02680 at 570.513 kb on - strand, within ABZR87_RS02680 at 570.513 kb on - strand, within ABZR87_RS02680 at 570.513 kb on - strand, within ABZR87_RS02680 at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.686 kb on + strand at 570.687 kb on - strand at 570.687 kb on - strand at 570.687 kb on - strand at 570.687 kb on - strand at 570.718 kb on + strand at 570.718 kb on + strand at 570.718 kb on + strand at 570.719 kb on - strand at 570.719 kb on - strand at 570.843 kb on + strand at 570.843 kb on + strand at 570.843 kb on + strand at 570.844 kb on - strand at 570.848 kb on + strand at 570.848 kb on + strand at 570.848 kb on + strand at 570.848 kb on + strand at 570.849 kb on - strand at 570.849 kb on - strand at 570.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 567,618 - +1.0 567,618 - -0.9 569,971 - +1.3 569,971 - -1.8 570,031 + +1.2 570,031 + -0.0 570,031 + -1.9 570,031 + -1.0 570,031 + -2.4 570,032 - +0.2 570,032 - +0.9 570,032 - -0.6 570,032 - +3.7 570,032 - -1.6 570,032 - -2.6 570,032 - -2.3 570,032 - -0.7 570,032 - -2.4 570,032 - -0.9 570,032 - +0.6 570,032 - -1.3 570,032 - +1.4 570,090 + ABZR87_RS02680 0.12 -0.8 570,090 + ABZR87_RS02680 0.12 -2.8 570,090 + ABZR87_RS02680 0.12 -0.5 570,090 + ABZR87_RS02680 0.12 -1.0 570,090 + ABZR87_RS02680 0.12 -2.1 570,090 + ABZR87_RS02680 0.12 -0.8 570,090 + ABZR87_RS02680 0.12 +0.2 570,090 + ABZR87_RS02680 0.12 -0.0 570,091 - ABZR87_RS02680 0.12 -1.1 570,091 - ABZR87_RS02680 0.12 -1.5 570,091 - ABZR87_RS02680 0.12 -1.4 570,091 - ABZR87_RS02680 0.12 -0.7 570,142 + ABZR87_RS02680 0.20 -1.6 570,143 - ABZR87_RS02680 0.20 -3.5 570,143 - ABZR87_RS02680 0.20 -0.8 570,143 - ABZR87_RS02680 0.20 -1.3 570,143 - ABZR87_RS02680 0.20 -2.9 570,164 + ABZR87_RS02680 0.23 +0.2 570,254 - ABZR87_RS02680 0.37 -1.2 570,328 + ABZR87_RS02680 0.48 -2.4 570,328 + ABZR87_RS02680 0.48 -1.1 570,328 + ABZR87_RS02680 0.48 +0.2 570,328 + ABZR87_RS02680 0.48 -1.0 570,328 + ABZR87_RS02680 0.48 -1.5 570,328 + ABZR87_RS02680 0.48 -2.6 570,329 - ABZR87_RS02680 0.48 -2.7 570,329 - ABZR87_RS02680 0.48 -3.4 570,329 - ABZR87_RS02680 0.48 -1.4 570,373 + ABZR87_RS02680 0.55 -1.7 570,373 + ABZR87_RS02680 0.55 -2.6 570,373 + ABZR87_RS02680 0.55 -1.7 570,374 - ABZR87_RS02680 0.55 -1.5 570,374 - ABZR87_RS02680 0.55 -1.5 570,439 + ABZR87_RS02680 0.65 -0.4 570,439 + ABZR87_RS02680 0.65 -1.8 570,439 + ABZR87_RS02680 0.65 -2.0 570,439 + ABZR87_RS02680 0.65 -0.1 570,440 - ABZR87_RS02680 0.65 -1.8 570,440 - ABZR87_RS02680 0.65 +0.0 570,440 - ABZR87_RS02680 0.65 -1.3 570,440 - ABZR87_RS02680 0.65 +0.2 570,440 - ABZR87_RS02680 0.65 -2.3 570,440 - ABZR87_RS02680 0.65 -1.4 570,512 + ABZR87_RS02680 0.76 -2.6 570,513 - ABZR87_RS02680 0.76 -0.4 570,513 - ABZR87_RS02680 0.76 -1.8 570,513 - ABZR87_RS02680 0.76 -1.0 570,686 + -2.7 570,686 + +0.4 570,686 + +0.2 570,686 + -2.2 570,686 + -1.3 570,686 + -0.4 570,686 + +1.3 570,686 + -1.0 570,686 + -2.3 570,687 - -1.0 570,687 - +1.9 570,687 - -0.1 570,687 - +0.5 570,718 + +0.7 570,718 + -0.6 570,718 + -2.6 570,719 - +1.4 570,719 - +0.5 570,843 + -2.7 570,843 + -2.7 570,843 + +0.9 570,844 - -0.9 570,848 + -0.6 570,848 + -3.5 570,848 + -0.6 570,848 + -0.7 570,849 - +0.0 570,849 - -1.2 570,849 - +0.5
Or see this region's nucleotide sequence