Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02615

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02605 and ABZR87_RS02610 overlap by 4 nucleotidesABZR87_RS02610 and ABZR87_RS02615 are separated by 2 nucleotidesABZR87_RS02615 and ABZR87_RS02620 are separated by 10 nucleotides ABZR87_RS02605: ABZR87_RS02605 - pilus assembly protein PilP, at 554,767 to 555,312 _RS02605 ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968 _RS02610 ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603 _RS02615 ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684 _RS02620 Position (kb) 555 556 557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 555.005 kb on + strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.006 kb on - strand, within ABZR87_RS02605at 555.116 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.165 kb on + strand, within ABZR87_RS02605at 555.166 kb on - strand, within ABZR87_RS02605at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.730 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.818 kb on - strand, within ABZR87_RS02610at 555.840 kb on + strand, within ABZR87_RS02610at 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 556.197 kb on + strand, within ABZR87_RS02615at 556.198 kb on - strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.506 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.509 kb on - strand, within ABZR87_RS02615at 556.509 kb on - strand, within ABZR87_RS02615at 556.509 kb on - strand, within ABZR87_RS02615at 556.523 kb on - strand, within ABZR87_RS02615at 556.546 kb on - strandat 556.615 kb on + strandat 556.615 kb on + strandat 556.616 kb on - strandat 556.654 kb on + strandat 556.654 kb on + strandat 556.654 kb on + strandat 556.654 kb on + strandat 556.655 kb on - strandat 556.655 kb on - strandat 556.655 kb on - strandat 556.709 kb on + strandat 556.709 kb on + strandat 556.710 kb on - strandat 556.736 kb on + strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.994 kb on + strand, within ABZR87_RS02620at 556.994 kb on + strand, within ABZR87_RS02620at 556.994 kb on + strand, within ABZR87_RS02620at 556.994 kb on + strand, within ABZR87_RS02620at 556.995 kb on - strand, within ABZR87_RS02620at 556.995 kb on - strand, within ABZR87_RS02620at 556.995 kb on - strand, within ABZR87_RS02620at 557.029 kb on + strand, within ABZR87_RS02620at 557.030 kb on - strand, within ABZR87_RS02620at 557.050 kb on + strand, within ABZR87_RS02620at 557.051 kb on - strand, within ABZR87_RS02620at 557.051 kb on - strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.520 kb on - strand, within ABZR87_RS02620

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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555,005 + ABZR87_RS02605 0.44 +0.9
555,005 + ABZR87_RS02605 0.44 +1.4
555,006 - ABZR87_RS02605 0.44 +1.2
555,116 + ABZR87_RS02605 0.64 +0.7
555,131 + ABZR87_RS02605 0.67 +1.2
555,131 + ABZR87_RS02605 0.67 +1.8
555,165 + ABZR87_RS02605 0.73 +1.6
555,166 - ABZR87_RS02605 0.73 +2.3
555,544 + ABZR87_RS02610 0.36 +1.5
555,544 + ABZR87_RS02610 0.36 +1.3
555,544 + ABZR87_RS02610 0.36 +1.3
555,544 + ABZR87_RS02610 0.36 +0.7
555,545 - ABZR87_RS02610 0.36 +1.4
555,545 - ABZR87_RS02610 0.36 +2.2
555,545 - ABZR87_RS02610 0.36 +0.8
555,545 - ABZR87_RS02610 0.36 +1.6
555,545 - ABZR87_RS02610 0.36 +1.6
555,547 + ABZR87_RS02610 0.36 +2.1
555,547 + ABZR87_RS02610 0.36 +1.8
555,547 + ABZR87_RS02610 0.36 +1.0
555,547 + ABZR87_RS02610 0.36 +1.9
555,547 + ABZR87_RS02610 0.36 +1.7
555,547 + ABZR87_RS02610 0.36 +2.4
555,548 - ABZR87_RS02610 0.36 +2.2
555,548 - ABZR87_RS02610 0.36 +2.3
555,729 + ABZR87_RS02610 0.64 +0.9
555,729 + ABZR87_RS02610 0.64 +1.8
555,729 + ABZR87_RS02610 0.64 +0.8
555,730 - ABZR87_RS02610 0.64 +0.9
555,752 - ABZR87_RS02610 0.67 +1.8
555,752 - ABZR87_RS02610 0.67 +1.4
555,817 + ABZR87_RS02610 0.77 +2.3
555,817 + ABZR87_RS02610 0.77 +1.2
555,817 + ABZR87_RS02610 0.77 +1.3
555,817 + ABZR87_RS02610 0.77 +1.1
555,817 + ABZR87_RS02610 0.77 -0.3
555,817 + ABZR87_RS02610 0.77 +2.1
555,817 + ABZR87_RS02610 0.77 +2.2
555,818 - ABZR87_RS02610 0.77 +1.2
555,840 + ABZR87_RS02610 0.80 +2.2
555,972 + +0.9
555,972 + +3.7
555,972 + -2.7
555,972 + -1.3
555,972 + +3.0
555,972 + +1.0
555,972 + -1.4
555,972 + +0.2
555,973 - +0.0
555,973 - +0.3
555,973 - -2.2
555,973 - -0.4
555,973 - -0.7
555,973 - +0.8
555,973 - +0.9
555,973 - +0.4
555,973 - -0.7
556,197 + ABZR87_RS02615 0.36 +0.3
556,198 - ABZR87_RS02615 0.36 +2.7
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +1.9
556,230 + ABZR87_RS02615 0.41 +0.4
556,230 + ABZR87_RS02615 0.41 +1.6
556,230 + ABZR87_RS02615 0.41 +1.0
556,231 - ABZR87_RS02615 0.41 +1.6
556,231 - ABZR87_RS02615 0.41 +2.1
556,231 - ABZR87_RS02615 0.41 +1.7
556,231 - ABZR87_RS02615 0.41 +1.8
556,231 - ABZR87_RS02615 0.41 +0.7
556,231 - ABZR87_RS02615 0.41 +1.1
556,231 - ABZR87_RS02615 0.41 +1.4
556,506 + ABZR87_RS02615 0.85 +1.6
556,508 + ABZR87_RS02615 0.85 +0.8
556,508 + ABZR87_RS02615 0.85 +0.3
556,508 + ABZR87_RS02615 0.85 +1.5
556,508 + ABZR87_RS02615 0.85 +1.4
556,508 + ABZR87_RS02615 0.85 -0.2
556,508 + ABZR87_RS02615 0.85 +1.8
556,509 - ABZR87_RS02615 0.85 +1.0
556,509 - ABZR87_RS02615 0.85 -0.5
556,509 - ABZR87_RS02615 0.85 +1.5
556,523 - ABZR87_RS02615 0.87 -1.5
556,546 - +2.2
556,615 + +0.1
556,615 + +0.0
556,616 - -0.8
556,654 + +1.0
556,654 + +1.4
556,654 + +1.1
556,654 + +0.4
556,655 - +0.3
556,655 - +2.7
556,655 - -0.9
556,709 + +0.7
556,709 + -0.2
556,710 - +0.7
556,736 + ABZR87_RS02620 0.11 +0.9
556,737 - ABZR87_RS02620 0.11 +0.3
556,737 - ABZR87_RS02620 0.11 +1.2
556,737 - ABZR87_RS02620 0.11 +0.6
556,737 - ABZR87_RS02620 0.11 +1.0
556,994 + ABZR87_RS02620 0.35 +2.2
556,994 + ABZR87_RS02620 0.35 +1.6
556,994 + ABZR87_RS02620 0.35 +1.7
556,994 + ABZR87_RS02620 0.35 +0.6
556,995 - ABZR87_RS02620 0.36 +1.1
556,995 - ABZR87_RS02620 0.36 -0.2
556,995 - ABZR87_RS02620 0.36 +3.5
557,029 + ABZR87_RS02620 0.39 +1.3
557,030 - ABZR87_RS02620 0.39 +2.1
557,050 + ABZR87_RS02620 0.41 +1.5
557,051 - ABZR87_RS02620 0.41 +0.9
557,051 - ABZR87_RS02620 0.41 +0.9
557,314 + ABZR87_RS02620 0.65 +1.5
557,314 + ABZR87_RS02620 0.65 +1.3
557,314 + ABZR87_RS02620 0.65 -0.0
557,314 + ABZR87_RS02620 0.65 +0.8
557,314 + ABZR87_RS02620 0.65 -1.5
557,315 - ABZR87_RS02620 0.65 +0.2
557,315 - ABZR87_RS02620 0.65 +1.2
557,315 - ABZR87_RS02620 0.65 -0.4
557,315 - ABZR87_RS02620 0.65 -0.0
557,315 - ABZR87_RS02620 0.65 +0.0
557,520 - ABZR87_RS02620 0.85 +0.3

Or see this region's nucleotide sequence