Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02610

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02600 and ABZR87_RS02605 are separated by 2 nucleotidesABZR87_RS02605 and ABZR87_RS02610 overlap by 4 nucleotidesABZR87_RS02610 and ABZR87_RS02615 are separated by 2 nucleotidesABZR87_RS02615 and ABZR87_RS02620 are separated by 10 nucleotides ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764 _RS02600 ABZR87_RS02605: ABZR87_RS02605 - pilus assembly protein PilP, at 554,767 to 555,312 _RS02605 ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968 _RS02610 ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603 _RS02615 ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684 _RS02620 Position (kb) 555 556Strain fitness (log2 ratio) -2 -1 0 1 2 3at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.402 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.900 kb on + strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.006 kb on - strand, within ABZR87_RS02605at 555.116 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.165 kb on + strand, within ABZR87_RS02605at 555.166 kb on - strand, within ABZR87_RS02605at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.730 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.818 kb on - strand, within ABZR87_RS02610at 555.840 kb on + strand, within ABZR87_RS02610at 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 556.197 kb on + strand, within ABZR87_RS02615at 556.198 kb on - strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.506 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.508 kb on + strand, within ABZR87_RS02615at 556.509 kb on - strand, within ABZR87_RS02615at 556.509 kb on - strand, within ABZR87_RS02615at 556.509 kb on - strand, within ABZR87_RS02615at 556.523 kb on - strand, within ABZR87_RS02615at 556.546 kb on - strandat 556.615 kb on + strandat 556.615 kb on + strandat 556.616 kb on - strandat 556.654 kb on + strandat 556.654 kb on + strandat 556.654 kb on + strandat 556.654 kb on + strandat 556.655 kb on - strandat 556.655 kb on - strandat 556.655 kb on - strandat 556.709 kb on + strandat 556.709 kb on + strandat 556.710 kb on - strandat 556.736 kb on + strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620at 556.737 kb on - strand, within ABZR87_RS02620

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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554,337 + ABZR87_RS02600 0.80 +2.1
554,337 + ABZR87_RS02600 0.80 +2.8
554,337 + ABZR87_RS02600 0.80 +0.3
554,338 - ABZR87_RS02600 0.80 +1.6
554,338 - ABZR87_RS02600 0.80 +0.5
554,338 - ABZR87_RS02600 0.80 -0.7
554,338 - ABZR87_RS02600 0.80 +0.0
554,338 - ABZR87_RS02600 0.80 +1.1
554,364 + ABZR87_RS02600 0.81 -0.3
554,364 + ABZR87_RS02600 0.81 +1.7
554,364 + ABZR87_RS02600 0.81 +2.0
554,365 - ABZR87_RS02600 0.81 +1.5
554,365 - ABZR87_RS02600 0.81 +1.5
554,365 - ABZR87_RS02600 0.81 -0.2
554,365 - ABZR87_RS02600 0.81 +0.6
554,365 - ABZR87_RS02600 0.81 +1.9
554,365 - ABZR87_RS02600 0.81 +1.0
554,402 - ABZR87_RS02600 0.83 +2.3
554,452 - ABZR87_RS02600 0.85 +1.6
554,452 - ABZR87_RS02600 0.85 +0.7
554,452 - ABZR87_RS02600 0.85 +1.9
554,885 + ABZR87_RS02605 0.22 +2.2
554,885 + ABZR87_RS02605 0.22 +1.5
554,885 + ABZR87_RS02605 0.22 +0.3
554,886 - ABZR87_RS02605 0.22 +1.6
554,886 - ABZR87_RS02605 0.22 +0.8
554,900 + ABZR87_RS02605 0.24 +2.1
554,901 - ABZR87_RS02605 0.25 +2.1
554,901 - ABZR87_RS02605 0.25 +2.6
554,901 - ABZR87_RS02605 0.25 +1.2
554,901 - ABZR87_RS02605 0.25 +0.2
554,901 - ABZR87_RS02605 0.25 +2.1
555,005 + ABZR87_RS02605 0.44 +0.9
555,005 + ABZR87_RS02605 0.44 +1.4
555,006 - ABZR87_RS02605 0.44 +1.2
555,116 + ABZR87_RS02605 0.64 +0.7
555,131 + ABZR87_RS02605 0.67 +1.2
555,131 + ABZR87_RS02605 0.67 +1.8
555,165 + ABZR87_RS02605 0.73 +1.6
555,166 - ABZR87_RS02605 0.73 +2.3
555,544 + ABZR87_RS02610 0.36 +1.5
555,544 + ABZR87_RS02610 0.36 +1.3
555,544 + ABZR87_RS02610 0.36 +1.3
555,544 + ABZR87_RS02610 0.36 +0.7
555,545 - ABZR87_RS02610 0.36 +1.4
555,545 - ABZR87_RS02610 0.36 +2.2
555,545 - ABZR87_RS02610 0.36 +0.8
555,545 - ABZR87_RS02610 0.36 +1.6
555,545 - ABZR87_RS02610 0.36 +1.6
555,547 + ABZR87_RS02610 0.36 +2.1
555,547 + ABZR87_RS02610 0.36 +1.8
555,547 + ABZR87_RS02610 0.36 +1.0
555,547 + ABZR87_RS02610 0.36 +1.9
555,547 + ABZR87_RS02610 0.36 +1.7
555,547 + ABZR87_RS02610 0.36 +2.4
555,548 - ABZR87_RS02610 0.36 +2.2
555,548 - ABZR87_RS02610 0.36 +2.3
555,729 + ABZR87_RS02610 0.64 +0.9
555,729 + ABZR87_RS02610 0.64 +1.8
555,729 + ABZR87_RS02610 0.64 +0.8
555,730 - ABZR87_RS02610 0.64 +0.9
555,752 - ABZR87_RS02610 0.67 +1.8
555,752 - ABZR87_RS02610 0.67 +1.4
555,817 + ABZR87_RS02610 0.77 +2.3
555,817 + ABZR87_RS02610 0.77 +1.2
555,817 + ABZR87_RS02610 0.77 +1.3
555,817 + ABZR87_RS02610 0.77 +1.1
555,817 + ABZR87_RS02610 0.77 -0.3
555,817 + ABZR87_RS02610 0.77 +2.1
555,817 + ABZR87_RS02610 0.77 +2.2
555,818 - ABZR87_RS02610 0.77 +1.2
555,840 + ABZR87_RS02610 0.80 +2.2
555,972 + +0.9
555,972 + +3.7
555,972 + -2.7
555,972 + -1.3
555,972 + +3.0
555,972 + +1.0
555,972 + -1.4
555,972 + +0.2
555,973 - +0.0
555,973 - +0.3
555,973 - -2.2
555,973 - -0.4
555,973 - -0.7
555,973 - +0.8
555,973 - +0.9
555,973 - +0.4
555,973 - -0.7
556,197 + ABZR87_RS02615 0.36 +0.3
556,198 - ABZR87_RS02615 0.36 +2.7
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +1.9
556,230 + ABZR87_RS02615 0.41 +0.4
556,230 + ABZR87_RS02615 0.41 +1.6
556,230 + ABZR87_RS02615 0.41 +1.0
556,231 - ABZR87_RS02615 0.41 +1.6
556,231 - ABZR87_RS02615 0.41 +2.1
556,231 - ABZR87_RS02615 0.41 +1.7
556,231 - ABZR87_RS02615 0.41 +1.8
556,231 - ABZR87_RS02615 0.41 +0.7
556,231 - ABZR87_RS02615 0.41 +1.1
556,231 - ABZR87_RS02615 0.41 +1.4
556,506 + ABZR87_RS02615 0.85 +1.6
556,508 + ABZR87_RS02615 0.85 +0.8
556,508 + ABZR87_RS02615 0.85 +0.3
556,508 + ABZR87_RS02615 0.85 +1.5
556,508 + ABZR87_RS02615 0.85 +1.4
556,508 + ABZR87_RS02615 0.85 -0.2
556,508 + ABZR87_RS02615 0.85 +1.8
556,509 - ABZR87_RS02615 0.85 +1.0
556,509 - ABZR87_RS02615 0.85 -0.5
556,509 - ABZR87_RS02615 0.85 +1.5
556,523 - ABZR87_RS02615 0.87 -1.5
556,546 - +2.2
556,615 + +0.1
556,615 + +0.0
556,616 - -0.8
556,654 + +1.0
556,654 + +1.4
556,654 + +1.1
556,654 + +0.4
556,655 - +0.3
556,655 - +2.7
556,655 - -0.9
556,709 + +0.7
556,709 + -0.2
556,710 - +0.7
556,736 + ABZR87_RS02620 0.11 +0.9
556,737 - ABZR87_RS02620 0.11 +0.3
556,737 - ABZR87_RS02620 0.11 +1.2
556,737 - ABZR87_RS02620 0.11 +0.6
556,737 - ABZR87_RS02620 0.11 +1.0

Or see this region's nucleotide sequence