Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02250 and ABZR87_RS02255 are separated by 179 nucleotides ABZR87_RS02255 and ABZR87_RS02260 are separated by 97 nucleotides ABZR87_RS02260 and ABZR87_RS02265 are separated by 68 nucleotides ABZR87_RS02265 and ABZR87_RS02270 are separated by 19 nucleotides
ABZR87_RS02250: ABZR87_RS02250 - peptide chain release factor 1, at 483,271 to 484,353
_RS02250
ABZR87_RS02255: ABZR87_RS02255 - hypothetical protein, at 484,533 to 484,901
_RS02255
ABZR87_RS02260: ABZR87_RS02260 - peptide chain release factor N(5)-glutamine methyltransferase, at 484,999 to 485,901
_RS02260
ABZR87_RS02265: ABZR87_RS02265 - Grx4 family monothiol glutaredoxin, at 485,970 to 486,281
_RS02265
ABZR87_RS02270: ABZR87_RS02270 - UbiX family flavin prenyltransferase, at 486,301 to 486,924
_RS02270
Position (kb) 484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 484.404 kb on + strand at 484.404 kb on + strand at 484.440 kb on + strand at 484.441 kb on + strand at 484.441 kb on + strand at 484.441 kb on + strand at 484.441 kb on + strand at 484.441 kb on + strand at 484.441 kb on + strand at 484.442 kb on - strand at 484.442 kb on - strand at 484.442 kb on - strand at 484.442 kb on - strand at 484.442 kb on - strand at 484.442 kb on - strand at 484.443 kb on + strand at 484.443 kb on + strand at 484.443 kb on + strand at 484.443 kb on + strand at 484.443 kb on + strand at 484.444 kb on - strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.539 kb on - strand at 484.539 kb on - strand at 484.539 kb on - strand at 484.539 kb on - strand at 484.556 kb on + strand at 484.556 kb on + strand at 484.557 kb on - strand at 484.566 kb on - strand at 484.900 kb on - strand at 484.961 kb on + strand at 484.962 kb on - strand at 484.962 kb on - strand at 485.899 kb on + strand at 485.900 kb on - strand at 485.900 kb on - strand at 486.165 kb on + strand, within ABZR87_RS02265 at 486.165 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.243 kb on + strand, within ABZR87_RS02265 at 486.243 kb on + strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 484,404 + -0.2 484,404 + -0.1 484,440 + -0.4 484,441 + -0.5 484,441 + +0.9 484,441 + -0.9 484,441 + -0.2 484,441 + -0.1 484,441 + +1.4 484,442 - +1.0 484,442 - -0.9 484,442 - -0.6 484,442 - +0.2 484,442 - +0.1 484,442 - -1.9 484,443 + -1.6 484,443 + -0.3 484,443 + +0.6 484,443 + -0.8 484,443 + -1.1 484,444 - +0.2 484,520 + +0.8 484,520 + +0.3 484,521 - +0.3 484,521 - +1.2 484,539 - +0.3 484,539 - -1.3 484,539 - +0.1 484,539 - +0.5 484,556 + -0.5 484,556 + -1.0 484,557 - +0.3 484,566 - -0.1 484,900 - -1.1 484,961 + -2.4 484,962 - +0.9 484,962 - -0.2 485,899 + +0.1 485,900 - -0.9 485,900 - +0.2 486,165 + ABZR87_RS02265 0.62 +0.2 486,165 + ABZR87_RS02265 0.62 -1.1 486,195 + ABZR87_RS02265 0.72 +0.4 486,195 + ABZR87_RS02265 0.72 -1.2 486,195 + ABZR87_RS02265 0.72 -1.8 486,195 + ABZR87_RS02265 0.72 -1.9 486,195 + ABZR87_RS02265 0.72 -0.5 486,195 + ABZR87_RS02265 0.72 +0.5 486,195 + ABZR87_RS02265 0.72 +2.4 486,195 + ABZR87_RS02265 0.72 -2.9 486,195 + ABZR87_RS02265 0.72 +0.3 486,195 + ABZR87_RS02265 0.72 -1.4 486,195 + ABZR87_RS02265 0.72 -0.7 486,196 - ABZR87_RS02265 0.72 -0.9 486,196 - ABZR87_RS02265 0.72 -1.5 486,196 - ABZR87_RS02265 0.72 -1.4 486,196 - ABZR87_RS02265 0.72 -0.9 486,196 - ABZR87_RS02265 0.72 +0.7 486,196 - ABZR87_RS02265 0.72 +0.7 486,196 - ABZR87_RS02265 0.72 -1.7 486,197 + ABZR87_RS02265 0.73 -0.9 486,197 + ABZR87_RS02265 0.73 +0.0 486,197 + ABZR87_RS02265 0.73 +0.3 486,197 + ABZR87_RS02265 0.73 +0.2 486,243 + ABZR87_RS02265 0.88 -0.9 486,243 + ABZR87_RS02265 0.88 +0.1 486,244 - ABZR87_RS02265 0.88 -0.3 486,244 - ABZR87_RS02265 0.88 +0.7 486,244 - ABZR87_RS02265 0.88 +0.9 486,244 - ABZR87_RS02265 0.88 -1.7 486,244 - ABZR87_RS02265 0.88 -1.2
Or see this region's nucleotide sequence