Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02055 and ABZR87_RS02060 are separated by 47 nucleotides ABZR87_RS02060 and ABZR87_RS02065 are separated by 262 nucleotides
ABZR87_RS02055: ABZR87_RS02055 - ABC transporter substrate-binding protein, at 441,843 to 443,000
_RS02055
ABZR87_RS02060: ABZR87_RS02060 - acetylornithine deacetylase, at 443,048 to 444,250
_RS02060
ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700
_RS02065
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 442.099 kb on - strand, within ABZR87_RS02055 at 442.124 kb on + strand, within ABZR87_RS02055 at 442.125 kb on - strand, within ABZR87_RS02055 at 442.125 kb on - strand, within ABZR87_RS02055 at 442.170 kb on + strand, within ABZR87_RS02055 at 442.170 kb on + strand, within ABZR87_RS02055 at 442.171 kb on - strand, within ABZR87_RS02055 at 442.305 kb on + strand, within ABZR87_RS02055 at 442.305 kb on + strand, within ABZR87_RS02055 at 442.374 kb on + strand, within ABZR87_RS02055 at 442.375 kb on - strand, within ABZR87_RS02055 at 442.375 kb on - strand, within ABZR87_RS02055 at 442.375 kb on - strand, within ABZR87_RS02055 at 442.375 kb on - strand, within ABZR87_RS02055 at 442.390 kb on - strand, within ABZR87_RS02055 at 442.557 kb on + strand, within ABZR87_RS02055 at 442.617 kb on + strand, within ABZR87_RS02055 at 442.617 kb on + strand, within ABZR87_RS02055 at 442.617 kb on + strand, within ABZR87_RS02055 at 442.618 kb on - strand, within ABZR87_RS02055 at 442.618 kb on - strand, within ABZR87_RS02055 at 442.618 kb on - strand, within ABZR87_RS02055 at 442.618 kb on - strand, within ABZR87_RS02055 at 442.618 kb on - strand, within ABZR87_RS02055 at 442.624 kb on + strand, within ABZR87_RS02055 at 442.624 kb on + strand, within ABZR87_RS02055 at 442.624 kb on + strand, within ABZR87_RS02055 at 442.625 kb on - strand, within ABZR87_RS02055 at 442.625 kb on - strand, within ABZR87_RS02055 at 442.625 kb on - strand, within ABZR87_RS02055 at 442.625 kb on - strand, within ABZR87_RS02055 at 442.625 kb on - strand, within ABZR87_RS02055 at 442.625 kb on - strand, within ABZR87_RS02055 at 442.655 kb on + strand, within ABZR87_RS02055 at 442.655 kb on + strand, within ABZR87_RS02055 at 442.655 kb on + strand, within ABZR87_RS02055 at 442.656 kb on - strand, within ABZR87_RS02055 at 442.656 kb on - strand, within ABZR87_RS02055 at 442.705 kb on - strand, within ABZR87_RS02055 at 442.710 kb on + strand, within ABZR87_RS02055 at 442.711 kb on - strand, within ABZR87_RS02055 at 442.711 kb on - strand, within ABZR87_RS02055 at 442.711 kb on - strand, within ABZR87_RS02055 at 442.711 kb on - strand, within ABZR87_RS02055 at 442.711 kb on - strand, within ABZR87_RS02055 at 442.713 kb on - strand, within ABZR87_RS02055 at 442.740 kb on + strand, within ABZR87_RS02055 at 442.741 kb on - strand, within ABZR87_RS02055 at 442.741 kb on - strand, within ABZR87_RS02055 at 442.770 kb on - strand, within ABZR87_RS02055 at 442.782 kb on + strand, within ABZR87_RS02055 at 442.782 kb on + strand, within ABZR87_RS02055 at 442.800 kb on + strand, within ABZR87_RS02055 at 442.800 kb on + strand, within ABZR87_RS02055 at 442.801 kb on - strand, within ABZR87_RS02055 at 442.801 kb on - strand, within ABZR87_RS02055 at 442.896 kb on + strand at 442.896 kb on + strand at 442.896 kb on + strand at 442.896 kb on + strand at 442.897 kb on - strand at 442.897 kb on - strand at 443.130 kb on + strand at 443.131 kb on - strand at 443.131 kb on - strand at 443.131 kb on - strand at 443.223 kb on + strand, within ABZR87_RS02060 at 443.223 kb on + strand, within ABZR87_RS02060 at 443.224 kb on - strand, within ABZR87_RS02060 at 443.314 kb on + strand, within ABZR87_RS02060 at 443.314 kb on + strand, within ABZR87_RS02060 at 443.314 kb on + strand, within ABZR87_RS02060 at 443.315 kb on - strand, within ABZR87_RS02060 at 443.391 kb on + strand, within ABZR87_RS02060 at 443.391 kb on + strand, within ABZR87_RS02060 at 443.392 kb on - strand, within ABZR87_RS02060 at 443.392 kb on - strand, within ABZR87_RS02060 at 443.392 kb on - strand, within ABZR87_RS02060 at 443.392 kb on - strand, within ABZR87_RS02060 at 443.492 kb on - strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.683 kb on - strand, within ABZR87_RS02060 at 443.683 kb on - strand, within ABZR87_RS02060 at 443.820 kb on + strand, within ABZR87_RS02060 at 443.820 kb on + strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.875 kb on + strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.085 kb on - strand, within ABZR87_RS02060 at 444.085 kb on - strand, within ABZR87_RS02060 at 444.336 kb on + strand at 444.336 kb on + strand at 444.336 kb on + strand at 444.336 kb on + strand at 444.337 kb on - strand at 444.337 kb on - strand at 444.337 kb on - strand at 444.365 kb on + strand at 444.365 kb on + strand at 444.365 kb on + strand at 444.366 kb on - strand at 444.402 kb on + strand at 444.465 kb on + strand at 444.465 kb on + strand at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 442,099 - ABZR87_RS02055 0.22 +1.6 442,124 + ABZR87_RS02055 0.24 -2.2 442,125 - ABZR87_RS02055 0.24 +0.9 442,125 - ABZR87_RS02055 0.24 -0.7 442,170 + ABZR87_RS02055 0.28 +1.1 442,170 + ABZR87_RS02055 0.28 -0.3 442,171 - ABZR87_RS02055 0.28 +1.4 442,305 + ABZR87_RS02055 0.40 +0.1 442,305 + ABZR87_RS02055 0.40 -0.7 442,374 + ABZR87_RS02055 0.46 -1.2 442,375 - ABZR87_RS02055 0.46 +1.1 442,375 - ABZR87_RS02055 0.46 -1.2 442,375 - ABZR87_RS02055 0.46 +0.6 442,375 - ABZR87_RS02055 0.46 +0.2 442,390 - ABZR87_RS02055 0.47 +0.0 442,557 + ABZR87_RS02055 0.62 -0.3 442,617 + ABZR87_RS02055 0.67 -1.0 442,617 + ABZR87_RS02055 0.67 -0.1 442,617 + ABZR87_RS02055 0.67 -0.7 442,618 - ABZR87_RS02055 0.67 +0.2 442,618 - ABZR87_RS02055 0.67 +0.5 442,618 - ABZR87_RS02055 0.67 -1.4 442,618 - ABZR87_RS02055 0.67 -1.2 442,618 - ABZR87_RS02055 0.67 -0.5 442,624 + ABZR87_RS02055 0.67 +1.5 442,624 + ABZR87_RS02055 0.67 -0.1 442,624 + ABZR87_RS02055 0.67 -0.5 442,625 - ABZR87_RS02055 0.68 -1.8 442,625 - ABZR87_RS02055 0.68 +2.3 442,625 - ABZR87_RS02055 0.68 -0.4 442,625 - ABZR87_RS02055 0.68 -0.3 442,625 - ABZR87_RS02055 0.68 -0.5 442,625 - ABZR87_RS02055 0.68 +1.0 442,655 + ABZR87_RS02055 0.70 -0.9 442,655 + ABZR87_RS02055 0.70 +0.4 442,655 + ABZR87_RS02055 0.70 -1.7 442,656 - ABZR87_RS02055 0.70 +0.6 442,656 - ABZR87_RS02055 0.70 +0.4 442,705 - ABZR87_RS02055 0.74 -0.6 442,710 + ABZR87_RS02055 0.75 -0.6 442,711 - ABZR87_RS02055 0.75 +0.6 442,711 - ABZR87_RS02055 0.75 -2.2 442,711 - ABZR87_RS02055 0.75 +0.1 442,711 - ABZR87_RS02055 0.75 +0.3 442,711 - ABZR87_RS02055 0.75 -0.0 442,713 - ABZR87_RS02055 0.75 -0.3 442,740 + ABZR87_RS02055 0.77 +1.2 442,741 - ABZR87_RS02055 0.78 -1.2 442,741 - ABZR87_RS02055 0.78 +0.4 442,770 - ABZR87_RS02055 0.80 -1.6 442,782 + ABZR87_RS02055 0.81 +0.1 442,782 + ABZR87_RS02055 0.81 -1.4 442,800 + ABZR87_RS02055 0.83 +0.2 442,800 + ABZR87_RS02055 0.83 +0.5 442,801 - ABZR87_RS02055 0.83 -0.3 442,801 - ABZR87_RS02055 0.83 +1.1 442,896 + -0.3 442,896 + +0.8 442,896 + +0.9 442,896 + +0.1 442,897 - +1.6 442,897 - -1.0 443,130 + -1.7 443,131 - -0.5 443,131 - -1.0 443,131 - -0.6 443,223 + ABZR87_RS02060 0.15 +0.3 443,223 + ABZR87_RS02060 0.15 -0.5 443,224 - ABZR87_RS02060 0.15 -0.4 443,314 + ABZR87_RS02060 0.22 +0.9 443,314 + ABZR87_RS02060 0.22 +2.8 443,314 + ABZR87_RS02060 0.22 -0.4 443,315 - ABZR87_RS02060 0.22 +0.4 443,391 + ABZR87_RS02060 0.29 +0.4 443,391 + ABZR87_RS02060 0.29 +0.4 443,392 - ABZR87_RS02060 0.29 +0.6 443,392 - ABZR87_RS02060 0.29 +0.1 443,392 - ABZR87_RS02060 0.29 +0.3 443,392 - ABZR87_RS02060 0.29 +0.1 443,492 - ABZR87_RS02060 0.37 -2.0 443,590 + ABZR87_RS02060 0.45 -1.2 443,590 + ABZR87_RS02060 0.45 -0.3 443,590 + ABZR87_RS02060 0.45 -1.4 443,591 - ABZR87_RS02060 0.45 +0.6 443,591 - ABZR87_RS02060 0.45 +0.1 443,591 - ABZR87_RS02060 0.45 -0.7 443,591 - ABZR87_RS02060 0.45 -1.4 443,683 - ABZR87_RS02060 0.53 +0.1 443,683 - ABZR87_RS02060 0.53 +1.8 443,820 + ABZR87_RS02060 0.64 -0.0 443,820 + ABZR87_RS02060 0.64 +1.6 443,821 - ABZR87_RS02060 0.64 -0.7 443,821 - ABZR87_RS02060 0.64 +0.7 443,821 - ABZR87_RS02060 0.64 +0.4 443,831 + ABZR87_RS02060 0.65 +0.6 443,831 + ABZR87_RS02060 0.65 +2.6 443,831 + ABZR87_RS02060 0.65 -0.5 443,831 + ABZR87_RS02060 0.65 +0.5 443,831 + ABZR87_RS02060 0.65 -1.0 443,831 + ABZR87_RS02060 0.65 +0.5 443,831 + ABZR87_RS02060 0.65 +0.6 443,831 + ABZR87_RS02060 0.65 +1.2 443,831 + ABZR87_RS02060 0.65 +0.8 443,832 - ABZR87_RS02060 0.65 -0.6 443,832 - ABZR87_RS02060 0.65 +0.5 443,832 - ABZR87_RS02060 0.65 +0.3 443,832 - ABZR87_RS02060 0.65 -0.5 443,832 - ABZR87_RS02060 0.65 +0.4 443,875 + ABZR87_RS02060 0.69 +1.0 443,876 - ABZR87_RS02060 0.69 +1.5 443,876 - ABZR87_RS02060 0.69 +1.7 443,876 - ABZR87_RS02060 0.69 +0.6 443,876 - ABZR87_RS02060 0.69 -1.7 443,876 - ABZR87_RS02060 0.69 -0.7 444,084 + ABZR87_RS02060 0.86 +1.1 444,084 + ABZR87_RS02060 0.86 -0.2 444,084 + ABZR87_RS02060 0.86 +1.2 444,084 + ABZR87_RS02060 0.86 +0.2 444,084 + ABZR87_RS02060 0.86 +0.4 444,084 + ABZR87_RS02060 0.86 +0.9 444,085 - ABZR87_RS02060 0.86 +1.0 444,085 - ABZR87_RS02060 0.86 +0.7 444,336 + +0.3 444,336 + -1.0 444,336 + +0.5 444,336 + -0.2 444,337 - -0.9 444,337 - -0.8 444,337 - -0.1 444,365 + +1.2 444,365 + -0.1 444,365 + +0.4 444,366 - +0.3 444,402 + +0.6 444,465 + -0.6 444,465 + +0.1 444,855 + ABZR87_RS02065 0.29 -0.3 444,855 + ABZR87_RS02065 0.29 +1.2 444,855 + ABZR87_RS02065 0.29 -1.2 444,855 + ABZR87_RS02065 0.29 -0.1 444,855 + ABZR87_RS02065 0.29 -1.4 444,855 + ABZR87_RS02065 0.29 -0.1 444,855 + ABZR87_RS02065 0.29 -0.8 444,855 + ABZR87_RS02065 0.29 +0.9 444,856 - ABZR87_RS02065 0.29 +0.3 444,856 - ABZR87_RS02065 0.29 -1.0 444,856 - ABZR87_RS02065 0.29 -0.6 444,856 - ABZR87_RS02065 0.29 +1.4 445,148 - ABZR87_RS02065 0.53 -0.2 445,148 - ABZR87_RS02065 0.53 -1.2 445,148 - ABZR87_RS02065 0.53 -1.9 445,148 - ABZR87_RS02065 0.53 +0.1 445,172 + ABZR87_RS02065 0.55 +2.0 445,172 + ABZR87_RS02065 0.55 +1.1 445,172 + ABZR87_RS02065 0.55 +0.5 445,173 - ABZR87_RS02065 0.56 -1.2 445,173 - ABZR87_RS02065 0.56 +1.7
Or see this region's nucleotide sequence