Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01855

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01850 and ABZR87_RS01855 overlap by 1 nucleotidesABZR87_RS01855 and ABZR87_RS01860 are separated by 13 nucleotidesABZR87_RS01860 and ABZR87_RS01865 are separated by 134 nucleotides ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109 _RS01850 ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990 _RS01855 ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618 _RS01860 ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511 _RS01865 Position (kb) 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 393.273 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.289 kb on - strand, within ABZR87_RS01850at 393.289 kb on - strand, within ABZR87_RS01850at 393.289 kb on - strand, within ABZR87_RS01850at 393.357 kb on + strand, within ABZR87_RS01850at 393.357 kb on + strand, within ABZR87_RS01850at 393.357 kb on + strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.408 kb on + strand, within ABZR87_RS01850at 393.409 kb on - strand, within ABZR87_RS01850at 393.409 kb on - strand, within ABZR87_RS01850at 393.480 kb on - strand, within ABZR87_RS01850at 393.480 kb on - strand, within ABZR87_RS01850at 393.480 kb on - strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.722 kb on + strand, within ABZR87_RS01850at 393.722 kb on + strand, within ABZR87_RS01850at 393.723 kb on - strand, within ABZR87_RS01850at 393.723 kb on - strand, within ABZR87_RS01850at 393.795 kb on - strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.805 kb on - strand, within ABZR87_RS01850at 393.805 kb on - strand, within ABZR87_RS01850at 393.805 kb on - strand, within ABZR87_RS01850at 393.838 kb on + strand, within ABZR87_RS01850at 393.838 kb on + strand, within ABZR87_RS01850at 393.838 kb on + strand, within ABZR87_RS01850at 393.839 kb on - strand, within ABZR87_RS01850at 393.970 kb on - strand, within ABZR87_RS01850at 393.970 kb on - strand, within ABZR87_RS01850at 393.998 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.377 kb on + strand, within ABZR87_RS01855at 394.377 kb on + strand, within ABZR87_RS01855at 394.440 kb on - strand, within ABZR87_RS01855at 394.485 kb on + strand, within ABZR87_RS01855at 394.485 kb on + strand, within ABZR87_RS01855at 394.486 kb on - strand, within ABZR87_RS01855at 394.685 kb on + strand, within ABZR87_RS01855at 394.686 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.715 kb on + strand, within ABZR87_RS01855at 394.715 kb on + strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.749 kb on - strand, within ABZR87_RS01855at 394.988 kb on + strandat 395.558 kb on + strandat 395.605 kb on - strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.677 kb on - strandat 395.677 kb on - strandat 395.719 kb on + strandat 395.719 kb on + strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.763 kb on - strandat 395.768 kb on + strandat 395.770 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
remove
393,273 + ABZR87_RS01850 0.34 +1.3
393,288 + ABZR87_RS01850 0.35 +2.1
393,288 + ABZR87_RS01850 0.35 +2.0
393,288 + ABZR87_RS01850 0.35 +1.1
393,288 + ABZR87_RS01850 0.35 +2.1
393,288 + ABZR87_RS01850 0.35 +1.4
393,289 - ABZR87_RS01850 0.35 +0.3
393,289 - ABZR87_RS01850 0.35 -0.5
393,289 - ABZR87_RS01850 0.35 +1.7
393,357 + ABZR87_RS01850 0.41 +1.5
393,357 + ABZR87_RS01850 0.41 -1.6
393,357 + ABZR87_RS01850 0.41 +0.0
393,358 - ABZR87_RS01850 0.41 +1.8
393,358 - ABZR87_RS01850 0.41 +0.4
393,358 - ABZR87_RS01850 0.41 -0.1
393,358 - ABZR87_RS01850 0.41 -1.3
393,408 + ABZR87_RS01850 0.45 +0.9
393,409 - ABZR87_RS01850 0.45 +1.2
393,409 - ABZR87_RS01850 0.45 -1.1
393,480 - ABZR87_RS01850 0.50 +0.9
393,480 - ABZR87_RS01850 0.50 +0.0
393,480 - ABZR87_RS01850 0.50 -1.3
393,567 + ABZR87_RS01850 0.57 +1.5
393,567 + ABZR87_RS01850 0.57 +1.0
393,567 + ABZR87_RS01850 0.57 +1.5
393,567 + ABZR87_RS01850 0.57 +0.6
393,567 + ABZR87_RS01850 0.57 +1.4
393,567 + ABZR87_RS01850 0.57 +3.2
393,567 + ABZR87_RS01850 0.57 +1.4
393,567 + ABZR87_RS01850 0.57 +2.2
393,568 - ABZR87_RS01850 0.57 -2.5
393,568 - ABZR87_RS01850 0.57 +0.3
393,568 - ABZR87_RS01850 0.57 +1.9
393,568 - ABZR87_RS01850 0.57 -0.5
393,568 - ABZR87_RS01850 0.57 +0.6
393,722 + ABZR87_RS01850 0.69 +1.7
393,722 + ABZR87_RS01850 0.69 +1.1
393,723 - ABZR87_RS01850 0.69 +1.3
393,723 - ABZR87_RS01850 0.69 +1.0
393,795 - ABZR87_RS01850 0.75 +0.8
393,804 + ABZR87_RS01850 0.76 +0.4
393,804 + ABZR87_RS01850 0.76 +1.7
393,804 + ABZR87_RS01850 0.76 +0.9
393,804 + ABZR87_RS01850 0.76 +1.8
393,805 - ABZR87_RS01850 0.76 -1.2
393,805 - ABZR87_RS01850 0.76 +0.6
393,805 - ABZR87_RS01850 0.76 +1.0
393,838 + ABZR87_RS01850 0.79 +1.0
393,838 + ABZR87_RS01850 0.79 +0.6
393,838 + ABZR87_RS01850 0.79 +2.8
393,839 - ABZR87_RS01850 0.79 +0.1
393,970 - ABZR87_RS01850 0.89 +0.2
393,970 - ABZR87_RS01850 0.89 +1.8
393,998 + +2.1
394,074 + +1.3
394,074 + +3.1
394,074 + +1.4
394,074 + +0.8
394,074 + +1.6
394,074 + +1.1
394,075 - +1.3
394,075 - +1.0
394,075 - +2.1
394,075 - +2.4
394,075 - +1.4
394,075 - -0.1
394,075 - +3.4
394,075 - +0.2
394,259 + ABZR87_RS01855 0.17 -0.2
394,259 + ABZR87_RS01855 0.17 +1.9
394,259 + ABZR87_RS01855 0.17 +0.8
394,259 + ABZR87_RS01855 0.17 -0.9
394,259 + ABZR87_RS01855 0.17 +1.3
394,260 - ABZR87_RS01855 0.17 -0.1
394,260 - ABZR87_RS01855 0.17 +3.1
394,260 - ABZR87_RS01855 0.17 +1.0
394,260 - ABZR87_RS01855 0.17 +0.3
394,304 + ABZR87_RS01855 0.22 +1.5
394,304 + ABZR87_RS01855 0.22 -0.8
394,304 + ABZR87_RS01855 0.22 +0.9
394,304 + ABZR87_RS01855 0.22 +1.4
394,304 + ABZR87_RS01855 0.22 +1.0
394,304 + ABZR87_RS01855 0.22 +0.7
394,304 + ABZR87_RS01855 0.22 +1.7
394,304 + ABZR87_RS01855 0.22 +1.2
394,304 + ABZR87_RS01855 0.22 +2.1
394,304 + ABZR87_RS01855 0.22 +0.7
394,304 + ABZR87_RS01855 0.22 +2.0
394,305 - ABZR87_RS01855 0.22 +0.1
394,305 - ABZR87_RS01855 0.22 +0.0
394,305 - ABZR87_RS01855 0.22 +0.4
394,305 - ABZR87_RS01855 0.22 +0.2
394,305 - ABZR87_RS01855 0.22 -0.5
394,305 - ABZR87_RS01855 0.22 +1.2
394,305 - ABZR87_RS01855 0.22 +1.2
394,377 + ABZR87_RS01855 0.30 +0.6
394,377 + ABZR87_RS01855 0.30 +0.4
394,440 - ABZR87_RS01855 0.38 -1.5
394,485 + ABZR87_RS01855 0.43 +1.4
394,485 + ABZR87_RS01855 0.43 +0.7
394,486 - ABZR87_RS01855 0.43 -0.4
394,685 + ABZR87_RS01855 0.65 -1.2
394,686 - ABZR87_RS01855 0.65 -3.0
394,707 - ABZR87_RS01855 0.68 -0.1
394,707 - ABZR87_RS01855 0.68 +0.7
394,707 - ABZR87_RS01855 0.68 +1.4
394,715 + ABZR87_RS01855 0.69 +1.1
394,715 + ABZR87_RS01855 0.69 +1.7
394,716 - ABZR87_RS01855 0.69 +1.3
394,716 - ABZR87_RS01855 0.69 +1.7
394,716 - ABZR87_RS01855 0.69 +1.7
394,749 - ABZR87_RS01855 0.73 +0.4
394,988 + -2.0
395,558 + -2.6
395,605 - +0.3
395,676 + +1.2
395,676 + +0.2
395,676 + -0.9
395,676 + +0.3
395,676 + -0.4
395,676 + -0.4
395,676 + +0.2
395,676 + +1.7
395,676 + -0.7
395,676 + +0.9
395,676 + -0.8
395,677 - -0.3
395,677 - -0.2
395,719 + -1.9
395,719 + +0.1
395,720 - -0.3
395,720 - +1.7
395,720 - -1.1
395,762 + -0.4
395,762 + -1.9
395,762 + -0.4
395,763 - -0.5
395,768 + -0.8
395,770 + -1.5

Or see this region's nucleotide sequence