Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01615 and ABZR87_RS01620 are separated by 154 nucleotides ABZR87_RS01620 and ABZR87_RS01625 overlap by 4 nucleotides ABZR87_RS01625 and ABZR87_RS01630 are separated by 6 nucleotides
ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963
_RS01615
ABZR87_RS01620: ABZR87_RS01620 - chorismate lyase, at 341,118 to 341,696
_RS01620
ABZR87_RS01625: ABZR87_RS01625 - YqiA/YcfP family alpha/beta fold hydrolase, at 341,693 to 342,316
_RS01625
ABZR87_RS01630: ABZR87_RS01630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 342,323 to 343,708
_RS01630
Position (kb) 341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 340.971 kb on + strand at 340.971 kb on + strand at 340.971 kb on - strand at 340.972 kb on - strand at 341.040 kb on + strand at 341.040 kb on + strand at 341.041 kb on - strand at 341.041 kb on - strand at 341.041 kb on - strand at 341.081 kb on - strand at 341.113 kb on + strand at 341.114 kb on - strand at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.633 kb on - strand, within ABZR87_RS01620 at 341.677 kb on + strand at 341.738 kb on - strand at 341.766 kb on + strand, within ABZR87_RS01625 at 341.766 kb on + strand, within ABZR87_RS01625 at 341.766 kb on + strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.886 kb on + strand, within ABZR87_RS01625 at 341.887 kb on - strand, within ABZR87_RS01625 at 341.889 kb on + strand, within ABZR87_RS01625 at 341.889 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.001 kb on - strand, within ABZR87_RS01625 at 342.084 kb on + strand, within ABZR87_RS01625 at 342.084 kb on + strand, within ABZR87_RS01625 at 342.085 kb on - strand, within ABZR87_RS01625 at 342.085 kb on - strand, within ABZR87_RS01625 at 342.210 kb on + strand, within ABZR87_RS01625 at 342.211 kb on - strand, within ABZR87_RS01625 at 342.211 kb on - strand, within ABZR87_RS01625 at 342.316 kb on + strand at 342.317 kb on - strand at 342.317 kb on - strand at 342.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 340,971 + -0.4 340,971 + -0.4 340,971 - -1.1 340,972 - -0.3 341,040 + +0.3 341,040 + -0.3 341,041 - +0.6 341,041 - +0.4 341,041 - -0.1 341,081 - -0.9 341,113 + -0.1 341,114 - +0.3 341,425 + ABZR87_RS01620 0.53 -1.4 341,425 + ABZR87_RS01620 0.53 -0.2 341,425 + ABZR87_RS01620 0.53 -0.6 341,425 + ABZR87_RS01620 0.53 +0.3 341,425 + ABZR87_RS01620 0.53 -1.4 341,425 + ABZR87_RS01620 0.53 +0.2 341,425 + ABZR87_RS01620 0.53 +0.3 341,425 + ABZR87_RS01620 0.53 +0.6 341,426 - ABZR87_RS01620 0.53 -1.8 341,426 - ABZR87_RS01620 0.53 +1.6 341,426 - ABZR87_RS01620 0.53 -1.3 341,426 - ABZR87_RS01620 0.53 +0.1 341,426 - ABZR87_RS01620 0.53 +0.2 341,633 - ABZR87_RS01620 0.89 +1.0 341,677 + -0.5 341,738 - +0.7 341,766 + ABZR87_RS01625 0.12 -0.1 341,766 + ABZR87_RS01625 0.12 +0.2 341,766 + ABZR87_RS01625 0.12 -0.7 341,767 - ABZR87_RS01625 0.12 -0.3 341,767 - ABZR87_RS01625 0.12 -0.5 341,767 - ABZR87_RS01625 0.12 +0.7 341,767 - ABZR87_RS01625 0.12 -0.6 341,767 - ABZR87_RS01625 0.12 -0.5 341,886 + ABZR87_RS01625 0.31 -0.5 341,887 - ABZR87_RS01625 0.31 +0.1 341,889 + ABZR87_RS01625 0.31 -0.9 341,889 + ABZR87_RS01625 0.31 -1.7 342,000 + ABZR87_RS01625 0.49 -0.2 342,000 + ABZR87_RS01625 0.49 -1.5 342,000 + ABZR87_RS01625 0.49 +0.1 342,000 + ABZR87_RS01625 0.49 +0.2 342,000 + ABZR87_RS01625 0.49 -0.3 342,000 + ABZR87_RS01625 0.49 -2.0 342,000 + ABZR87_RS01625 0.49 -0.5 342,000 + ABZR87_RS01625 0.49 -1.0 342,001 - ABZR87_RS01625 0.49 -0.7 342,084 + ABZR87_RS01625 0.63 -0.3 342,084 + ABZR87_RS01625 0.63 -0.5 342,085 - ABZR87_RS01625 0.63 -1.1 342,085 - ABZR87_RS01625 0.63 -0.1 342,210 + ABZR87_RS01625 0.83 +0.6 342,211 - ABZR87_RS01625 0.83 -0.5 342,211 - ABZR87_RS01625 0.83 -0.1 342,316 + -1.3 342,317 - +0.8 342,317 - +0.3 342,317 - +0.5
Or see this region's nucleotide sequence