Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01460

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01450 and ABZR87_RS01455 overlap by 4 nucleotidesABZR87_RS01455 and ABZR87_RS01460 overlap by 4 nucleotidesABZR87_RS01460 and ABZR87_RS01465 overlap by 20 nucleotidesABZR87_RS01465 and ABZR87_RS01470 are separated by 10 nucleotides ABZR87_RS01450: ABZR87_RS01450 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 305,575 to 306,201 _RS01450 ABZR87_RS01455: ABZR87_RS01455 - SDR family oxidoreductase, at 306,198 to 307,004 _RS01455 ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885 _RS01460 ABZR87_RS01465: ABZR87_RS01465 - SMP-30/gluconolactonase/LRE family protein, at 307,866 to 308,780 _RS01465 ABZR87_RS01470: ABZR87_RS01470 - L-arabinose ABC transporter permease AraH, at 308,791 to 309,798 _RS01470 Position (kb) 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 306.209 kb on - strandat 306.293 kb on - strand, within ABZR87_RS01455at 306.293 kb on - strand, within ABZR87_RS01455at 306.454 kb on + strand, within ABZR87_RS01455at 306.455 kb on - strand, within ABZR87_RS01455at 306.457 kb on + strand, within ABZR87_RS01455at 307.032 kb on + strandat 307.033 kb on - strandat 307.164 kb on + strand, within ABZR87_RS01460at 307.164 kb on + strand, within ABZR87_RS01460at 307.164 kb on + strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.174 kb on - strand, within ABZR87_RS01460at 307.174 kb on - strand, within ABZR87_RS01460at 307.174 kb on - strand, within ABZR87_RS01460at 307.460 kb on + strand, within ABZR87_RS01460at 307.500 kb on + strand, within ABZR87_RS01460at 307.500 kb on + strand, within ABZR87_RS01460at 307.501 kb on - strand, within ABZR87_RS01460at 307.624 kb on - strand, within ABZR87_RS01460at 307.624 kb on - strand, within ABZR87_RS01460at 307.841 kb on + strandat 307.841 kb on + strandat 307.842 kb on - strandat 307.842 kb on - strandat 307.853 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.880 kb on - strandat 307.880 kb on - strandat 307.880 kb on - strandat 307.914 kb on + strandat 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.228 kb on + strand, within ABZR87_RS01465at 308.258 kb on - strand, within ABZR87_RS01465at 308.288 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.395 kb on + strand, within ABZR87_RS01465at 308.395 kb on + strand, within ABZR87_RS01465at 308.396 kb on - strand, within ABZR87_RS01465at 308.396 kb on - strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.871 kb on - strandat 308.871 kb on - strandat 308.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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306,209 - +0.1
306,293 - ABZR87_RS01455 0.12 -1.9
306,293 - ABZR87_RS01455 0.12 -1.1
306,454 + ABZR87_RS01455 0.32 -0.1
306,455 - ABZR87_RS01455 0.32 -0.1
306,457 + ABZR87_RS01455 0.32 +0.7
307,032 + -0.8
307,033 - -1.4
307,164 + ABZR87_RS01460 0.18 +0.5
307,164 + ABZR87_RS01460 0.18 +0.4
307,164 + ABZR87_RS01460 0.18 +0.1
307,165 - ABZR87_RS01460 0.19 -0.2
307,165 - ABZR87_RS01460 0.19 -1.6
307,165 - ABZR87_RS01460 0.19 -0.7
307,165 - ABZR87_RS01460 0.19 -2.1
307,165 - ABZR87_RS01460 0.19 +2.4
307,174 - ABZR87_RS01460 0.20 +2.2
307,174 - ABZR87_RS01460 0.20 +0.3
307,174 - ABZR87_RS01460 0.20 -1.4
307,460 + ABZR87_RS01460 0.52 +2.2
307,500 + ABZR87_RS01460 0.56 -1.1
307,500 + ABZR87_RS01460 0.56 +1.4
307,501 - ABZR87_RS01460 0.56 +0.6
307,624 - ABZR87_RS01460 0.70 -0.4
307,624 - ABZR87_RS01460 0.70 -0.4
307,841 + +1.0
307,841 + +1.0
307,842 - -0.0
307,842 - +0.6
307,853 + +0.6
307,879 + +0.5
307,879 + -0.9
307,879 + -0.3
307,879 + -0.4
307,879 + +0.2
307,879 + -1.0
307,879 + -1.4
307,879 + +0.1
307,880 - -1.1
307,880 - +0.4
307,880 - +1.7
307,914 + +0.3
308,005 + ABZR87_RS01465 0.15 +0.5
308,005 + ABZR87_RS01465 0.15 -0.8
308,005 + ABZR87_RS01465 0.15 +1.0
308,005 + ABZR87_RS01465 0.15 +0.4
308,006 - ABZR87_RS01465 0.15 -0.7
308,006 - ABZR87_RS01465 0.15 +0.5
308,006 - ABZR87_RS01465 0.15 +1.5
308,006 - ABZR87_RS01465 0.15 +1.3
308,228 + ABZR87_RS01465 0.40 +0.6
308,258 - ABZR87_RS01465 0.43 +0.2
308,288 + ABZR87_RS01465 0.46 +0.4
308,299 + ABZR87_RS01465 0.47 +0.3
308,299 + ABZR87_RS01465 0.47 -0.8
308,299 + ABZR87_RS01465 0.47 +0.3
308,300 - ABZR87_RS01465 0.47 +0.3
308,300 - ABZR87_RS01465 0.47 +0.3
308,300 - ABZR87_RS01465 0.47 -0.4
308,300 - ABZR87_RS01465 0.47 -0.6
308,300 - ABZR87_RS01465 0.47 -1.3
308,300 - ABZR87_RS01465 0.47 +0.0
308,395 + ABZR87_RS01465 0.58 +0.0
308,395 + ABZR87_RS01465 0.58 +1.1
308,396 - ABZR87_RS01465 0.58 +0.2
308,396 - ABZR87_RS01465 0.58 -1.7
308,446 + ABZR87_RS01465 0.63 -0.7
308,446 + ABZR87_RS01465 0.63 -0.3
308,446 + ABZR87_RS01465 0.63 +0.9
308,447 - ABZR87_RS01465 0.63 +1.1
308,447 - ABZR87_RS01465 0.63 -0.6
308,447 - ABZR87_RS01465 0.63 -2.0
308,447 - ABZR87_RS01465 0.63 +0.7
308,447 - ABZR87_RS01465 0.63 -1.1
308,447 - ABZR87_RS01465 0.63 -0.6
308,447 - ABZR87_RS01465 0.63 -2.1
308,447 - ABZR87_RS01465 0.63 -3.2
308,870 + +0.1
308,870 + -0.5
308,870 + -2.1
308,870 + +1.7
308,871 - -1.1
308,871 - +0.8
308,871 - -0.0

Or see this region's nucleotide sequence