Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01390

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01385 and ABZR87_RS01390 are separated by 17 nucleotidesABZR87_RS01390 and ABZR87_RS01395 are separated by 85 nucleotides ABZR87_RS01385: ABZR87_RS01385 - class I SAM-dependent RNA methyltransferase, at 289,849 to 291,258 _RS01385 ABZR87_RS01390: ABZR87_RS01390 - CopD family protein, at 291,276 to 291,698 _RS01390 ABZR87_RS01395: ABZR87_RS01395 - glutamate-5-semialdehyde dehydrogenase, at 291,784 to 293,064 _RS01395 Position (kb) 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 290.284 kb on - strand, within ABZR87_RS01385at 290.340 kb on + strand, within ABZR87_RS01385at 290.414 kb on + strand, within ABZR87_RS01385at 290.414 kb on + strand, within ABZR87_RS01385at 290.415 kb on - strand, within ABZR87_RS01385at 290.580 kb on + strand, within ABZR87_RS01385at 290.639 kb on + strand, within ABZR87_RS01385at 290.639 kb on + strand, within ABZR87_RS01385at 290.640 kb on - strand, within ABZR87_RS01385at 290.774 kb on + strand, within ABZR87_RS01385at 290.775 kb on - strand, within ABZR87_RS01385at 290.775 kb on - strand, within ABZR87_RS01385at 290.775 kb on - strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.832 kb on + strand, within ABZR87_RS01385at 290.833 kb on - strand, within ABZR87_RS01385at 290.975 kb on + strand, within ABZR87_RS01385at 290.975 kb on + strand, within ABZR87_RS01385at 290.975 kb on + strand, within ABZR87_RS01385at 290.975 kb on + strand, within ABZR87_RS01385at 290.976 kb on - strand, within ABZR87_RS01385at 290.976 kb on - strand, within ABZR87_RS01385at 290.976 kb on - strand, within ABZR87_RS01385at 290.976 kb on - strand, within ABZR87_RS01385at 291.008 kb on + strand, within ABZR87_RS01385at 291.008 kb on + strand, within ABZR87_RS01385at 291.008 kb on + strand, within ABZR87_RS01385at 291.008 kb on + strand, within ABZR87_RS01385at 291.008 kb on + strand, within ABZR87_RS01385at 291.008 kb on + strand, within ABZR87_RS01385at 291.009 kb on - strand, within ABZR87_RS01385at 291.009 kb on - strand, within ABZR87_RS01385at 291.009 kb on - strand, within ABZR87_RS01385at 291.009 kb on - strand, within ABZR87_RS01385at 291.245 kb on + strandat 291.246 kb on - strandat 291.246 kb on - strandat 291.246 kb on - strandat 291.818 kb on + strandat 291.818 kb on + strandat 291.819 kb on - strandat 291.819 kb on - strandat 291.819 kb on - strandat 291.993 kb on - strand, within ABZR87_RS01395at 291.993 kb on - strand, within ABZR87_RS01395at 292.031 kb on + strand, within ABZR87_RS01395at 292.031 kb on + strand, within ABZR87_RS01395at 292.031 kb on + strand, within ABZR87_RS01395at 292.031 kb on + strand, within ABZR87_RS01395at 292.031 kb on + strand, within ABZR87_RS01395at 292.031 kb on + strand, within ABZR87_RS01395at 292.032 kb on - strand, within ABZR87_RS01395at 292.032 kb on - strand, within ABZR87_RS01395at 292.212 kb on - strand, within ABZR87_RS01395at 292.212 kb on - strand, within ABZR87_RS01395at 292.358 kb on + strand, within ABZR87_RS01395at 292.463 kb on + strand, within ABZR87_RS01395at 292.463 kb on + strand, within ABZR87_RS01395at 292.464 kb on - strand, within ABZR87_RS01395at 292.686 kb on - strand, within ABZR87_RS01395at 292.686 kb on - strand, within ABZR87_RS01395at 292.686 kb on - strand, within ABZR87_RS01395at 292.686 kb on - strand, within ABZR87_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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290,284 - ABZR87_RS01385 0.31 -0.8
290,340 + ABZR87_RS01385 0.35 -2.7
290,414 + ABZR87_RS01385 0.40 -0.3
290,414 + ABZR87_RS01385 0.40 +0.4
290,415 - ABZR87_RS01385 0.40 -1.3
290,580 + ABZR87_RS01385 0.52 +1.5
290,639 + ABZR87_RS01385 0.56 -2.1
290,639 + ABZR87_RS01385 0.56 -0.3
290,640 - ABZR87_RS01385 0.56 +0.1
290,774 + ABZR87_RS01385 0.66 +1.1
290,775 - ABZR87_RS01385 0.66 +0.9
290,775 - ABZR87_RS01385 0.66 +0.5
290,775 - ABZR87_RS01385 0.66 -1.0
290,801 + ABZR87_RS01385 0.68 -0.6
290,801 + ABZR87_RS01385 0.68 -0.4
290,801 + ABZR87_RS01385 0.68 +0.0
290,801 + ABZR87_RS01385 0.68 +0.6
290,802 - ABZR87_RS01385 0.68 +1.1
290,802 - ABZR87_RS01385 0.68 -2.7
290,802 - ABZR87_RS01385 0.68 -0.4
290,802 - ABZR87_RS01385 0.68 +0.8
290,802 - ABZR87_RS01385 0.68 +0.8
290,807 + ABZR87_RS01385 0.68 +0.7
290,807 + ABZR87_RS01385 0.68 +1.1
290,807 + ABZR87_RS01385 0.68 +1.2
290,807 + ABZR87_RS01385 0.68 -0.5
290,807 + ABZR87_RS01385 0.68 -1.1
290,807 + ABZR87_RS01385 0.68 +1.1
290,808 - ABZR87_RS01385 0.68 +0.4
290,808 - ABZR87_RS01385 0.68 +0.1
290,808 - ABZR87_RS01385 0.68 +1.1
290,808 - ABZR87_RS01385 0.68 +0.3
290,808 - ABZR87_RS01385 0.68 -0.6
290,808 - ABZR87_RS01385 0.68 -0.4
290,808 - ABZR87_RS01385 0.68 +1.5
290,808 - ABZR87_RS01385 0.68 +0.9
290,808 - ABZR87_RS01385 0.68 +0.6
290,832 + ABZR87_RS01385 0.70 -0.9
290,833 - ABZR87_RS01385 0.70 -1.7
290,975 + ABZR87_RS01385 0.80 +0.6
290,975 + ABZR87_RS01385 0.80 -1.5
290,975 + ABZR87_RS01385 0.80 -0.4
290,975 + ABZR87_RS01385 0.80 -0.3
290,976 - ABZR87_RS01385 0.80 +0.1
290,976 - ABZR87_RS01385 0.80 +0.3
290,976 - ABZR87_RS01385 0.80 +0.8
290,976 - ABZR87_RS01385 0.80 -0.5
291,008 + ABZR87_RS01385 0.82 +2.6
291,008 + ABZR87_RS01385 0.82 +0.4
291,008 + ABZR87_RS01385 0.82 -0.6
291,008 + ABZR87_RS01385 0.82 -0.6
291,008 + ABZR87_RS01385 0.82 +0.6
291,008 + ABZR87_RS01385 0.82 -0.0
291,009 - ABZR87_RS01385 0.82 -1.0
291,009 - ABZR87_RS01385 0.82 -0.8
291,009 - ABZR87_RS01385 0.82 -2.0
291,009 - ABZR87_RS01385 0.82 -0.7
291,245 + +2.2
291,246 - -1.2
291,246 - +0.7
291,246 - -1.6
291,818 + -0.0
291,818 + -0.8
291,819 - -1.5
291,819 - -0.5
291,819 - -2.0
291,993 - ABZR87_RS01395 0.16 -0.9
291,993 - ABZR87_RS01395 0.16 +1.0
292,031 + ABZR87_RS01395 0.19 +0.6
292,031 + ABZR87_RS01395 0.19 +0.7
292,031 + ABZR87_RS01395 0.19 +0.9
292,031 + ABZR87_RS01395 0.19 -1.4
292,031 + ABZR87_RS01395 0.19 -0.8
292,031 + ABZR87_RS01395 0.19 -0.4
292,032 - ABZR87_RS01395 0.19 -1.3
292,032 - ABZR87_RS01395 0.19 -2.9
292,212 - ABZR87_RS01395 0.33 +1.2
292,212 - ABZR87_RS01395 0.33 -0.7
292,358 + ABZR87_RS01395 0.45 +2.2
292,463 + ABZR87_RS01395 0.53 +0.8
292,463 + ABZR87_RS01395 0.53 +2.8
292,464 - ABZR87_RS01395 0.53 -0.8
292,686 - ABZR87_RS01395 0.70 +0.0
292,686 - ABZR87_RS01395 0.70 +2.0
292,686 - ABZR87_RS01395 0.70 +0.3
292,686 - ABZR87_RS01395 0.70 -0.3

Or see this region's nucleotide sequence