Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01380

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01375 and ABZR87_RS01380 are separated by 82 nucleotidesABZR87_RS01380 and ABZR87_RS01385 are separated by 33 nucleotides ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725 _RS01375 ABZR87_RS01380: ABZR87_RS01380 - response regulator, at 288,808 to 289,815 _RS01380 ABZR87_RS01385: ABZR87_RS01385 - class I SAM-dependent RNA methyltransferase, at 289,849 to 291,258 _RS01385 Position (kb) 288 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 287.883 kb on + strand, within ABZR87_RS01375at 287.883 kb on + strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.952 kb on + strand, within ABZR87_RS01375at 287.953 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.357 kb on + strand, within ABZR87_RS01375at 288.741 kb on + strandat 288.741 kb on + strandat 288.742 kb on - strandat 288.742 kb on - strandat 288.742 kb on - strandat 288.793 kb on + strandat 288.793 kb on + strandat 288.794 kb on - strandat 288.844 kb on + strandat 288.844 kb on + strandat 288.844 kb on + strandat 288.845 kb on - strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.875 kb on - strandat 289.028 kb on - strand, within ABZR87_RS01380at 289.076 kb on - strand, within ABZR87_RS01380at 289.076 kb on - strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.131 kb on + strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.292 kb on - strand, within ABZR87_RS01380at 289.292 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.403 kb on - strand, within ABZR87_RS01380at 289.403 kb on - strand, within ABZR87_RS01380at 289.468 kb on + strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.850 kb on + strandat 289.850 kb on + strandat 289.850 kb on + strandat 289.851 kb on - strandat 289.851 kb on - strandat 289.851 kb on - strandat 289.851 kb on - strandat 289.851 kb on - strandat 289.885 kb on + strandat 289.964 kb on + strandat 289.965 kb on - strandat 289.975 kb on - strandat 290.284 kb on - strand, within ABZR87_RS01385at 290.340 kb on + strand, within ABZR87_RS01385at 290.414 kb on + strand, within ABZR87_RS01385at 290.414 kb on + strand, within ABZR87_RS01385at 290.415 kb on - strand, within ABZR87_RS01385at 290.580 kb on + strand, within ABZR87_RS01385at 290.639 kb on + strand, within ABZR87_RS01385at 290.639 kb on + strand, within ABZR87_RS01385at 290.640 kb on - strand, within ABZR87_RS01385at 290.774 kb on + strand, within ABZR87_RS01385at 290.775 kb on - strand, within ABZR87_RS01385at 290.775 kb on - strand, within ABZR87_RS01385at 290.775 kb on - strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.801 kb on + strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.802 kb on - strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.807 kb on + strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385at 290.808 kb on - strand, within ABZR87_RS01385

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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287,883 + ABZR87_RS01375 0.24 +3.4
287,883 + ABZR87_RS01375 0.24 +3.0
287,884 - ABZR87_RS01375 0.24 +3.4
287,884 - ABZR87_RS01375 0.24 +3.7
287,884 - ABZR87_RS01375 0.24 +3.8
287,884 - ABZR87_RS01375 0.24 +3.2
287,952 + ABZR87_RS01375 0.30 +2.9
287,953 - ABZR87_RS01375 0.30 +3.0
288,205 - ABZR87_RS01375 0.53 +3.9
288,205 - ABZR87_RS01375 0.53 +3.4
288,253 - ABZR87_RS01375 0.57 +3.4
288,253 - ABZR87_RS01375 0.57 +3.5
288,321 + ABZR87_RS01375 0.63 +3.3
288,321 + ABZR87_RS01375 0.63 +3.5
288,321 + ABZR87_RS01375 0.63 +3.2
288,321 + ABZR87_RS01375 0.63 +4.6
288,322 - ABZR87_RS01375 0.64 +3.7
288,322 - ABZR87_RS01375 0.64 +3.5
288,357 + ABZR87_RS01375 0.67 +3.1
288,741 + -0.3
288,741 + -0.5
288,742 - +1.7
288,742 - +1.0
288,742 - +0.5
288,793 + +0.0
288,793 + +0.1
288,794 - +1.2
288,844 + +1.2
288,844 + +1.4
288,844 + +1.2
288,845 - +0.9
288,874 + +0.8
288,874 + +0.5
288,874 + +0.8
288,874 + +0.0
288,875 - +1.4
289,028 - ABZR87_RS01380 0.22 +0.7
289,076 - ABZR87_RS01380 0.27 +0.9
289,076 - ABZR87_RS01380 0.27 +0.0
289,129 + ABZR87_RS01380 0.32 +0.5
289,129 + ABZR87_RS01380 0.32 +1.6
289,129 + ABZR87_RS01380 0.32 +2.2
289,130 - ABZR87_RS01380 0.32 +0.2
289,130 - ABZR87_RS01380 0.32 +1.4
289,130 - ABZR87_RS01380 0.32 -0.8
289,131 + ABZR87_RS01380 0.32 +0.8
289,132 - ABZR87_RS01380 0.32 +1.4
289,132 - ABZR87_RS01380 0.32 -0.9
289,132 - ABZR87_RS01380 0.32 +1.4
289,132 - ABZR87_RS01380 0.32 +1.4
289,132 - ABZR87_RS01380 0.32 +0.8
289,132 - ABZR87_RS01380 0.32 +1.5
289,132 - ABZR87_RS01380 0.32 +0.8
289,292 - ABZR87_RS01380 0.48 +0.6
289,292 - ABZR87_RS01380 0.48 +1.9
289,337 - ABZR87_RS01380 0.52 +0.2
289,337 - ABZR87_RS01380 0.52 +1.3
289,337 - ABZR87_RS01380 0.52 +1.8
289,403 - ABZR87_RS01380 0.59 -0.8
289,403 - ABZR87_RS01380 0.59 -2.0
289,468 + ABZR87_RS01380 0.65 +0.6
289,469 - ABZR87_RS01380 0.66 -0.5
289,469 - ABZR87_RS01380 0.66 +1.4
289,469 - ABZR87_RS01380 0.66 +1.6
289,469 - ABZR87_RS01380 0.66 -1.1
289,850 + +1.4
289,850 + +1.8
289,850 + -1.0
289,851 - -0.5
289,851 - +0.0
289,851 - +1.0
289,851 - -0.1
289,851 - -1.8
289,885 + -3.3
289,964 + +0.4
289,965 - +0.7
289,975 - +0.7
290,284 - ABZR87_RS01385 0.31 -0.8
290,340 + ABZR87_RS01385 0.35 -2.7
290,414 + ABZR87_RS01385 0.40 -0.3
290,414 + ABZR87_RS01385 0.40 +0.4
290,415 - ABZR87_RS01385 0.40 -1.3
290,580 + ABZR87_RS01385 0.52 +1.5
290,639 + ABZR87_RS01385 0.56 -2.1
290,639 + ABZR87_RS01385 0.56 -0.3
290,640 - ABZR87_RS01385 0.56 +0.1
290,774 + ABZR87_RS01385 0.66 +1.1
290,775 - ABZR87_RS01385 0.66 +0.9
290,775 - ABZR87_RS01385 0.66 +0.5
290,775 - ABZR87_RS01385 0.66 -1.0
290,801 + ABZR87_RS01385 0.68 -0.6
290,801 + ABZR87_RS01385 0.68 -0.4
290,801 + ABZR87_RS01385 0.68 +0.0
290,801 + ABZR87_RS01385 0.68 +0.6
290,802 - ABZR87_RS01385 0.68 +1.1
290,802 - ABZR87_RS01385 0.68 -2.7
290,802 - ABZR87_RS01385 0.68 -0.4
290,802 - ABZR87_RS01385 0.68 +0.8
290,802 - ABZR87_RS01385 0.68 +0.8
290,807 + ABZR87_RS01385 0.68 +0.7
290,807 + ABZR87_RS01385 0.68 +1.1
290,807 + ABZR87_RS01385 0.68 +1.2
290,807 + ABZR87_RS01385 0.68 -0.5
290,807 + ABZR87_RS01385 0.68 -1.1
290,807 + ABZR87_RS01385 0.68 +1.1
290,808 - ABZR87_RS01385 0.68 +0.4
290,808 - ABZR87_RS01385 0.68 +0.1
290,808 - ABZR87_RS01385 0.68 +1.1
290,808 - ABZR87_RS01385 0.68 +0.3
290,808 - ABZR87_RS01385 0.68 -0.6
290,808 - ABZR87_RS01385 0.68 -0.4
290,808 - ABZR87_RS01385 0.68 +1.5
290,808 - ABZR87_RS01385 0.68 +0.9
290,808 - ABZR87_RS01385 0.68 +0.6

Or see this region's nucleotide sequence