Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01375

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01370 and ABZR87_RS01375 are separated by 7 nucleotidesABZR87_RS01375 and ABZR87_RS01380 are separated by 82 nucleotides ABZR87_RS01370: ABZR87_RS01370 - ATP-binding protein, at 286,283 to 287,611 _RS01370 ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725 _RS01375 ABZR87_RS01380: ABZR87_RS01380 - response regulator, at 288,808 to 289,815 _RS01380 Position (kb) 287 288 289Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 286.625 kb on + strand, within ABZR87_RS01370at 286.625 kb on + strand, within ABZR87_RS01370at 286.626 kb on - strand, within ABZR87_RS01370at 286.626 kb on - strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 287.132 kb on + strand, within ABZR87_RS01370at 287.133 kb on - strand, within ABZR87_RS01370at 287.295 kb on + strand, within ABZR87_RS01370at 287.296 kb on - strand, within ABZR87_RS01370at 287.517 kb on - strandat 287.652 kb on + strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.709 kb on + strandat 287.883 kb on + strand, within ABZR87_RS01375at 287.883 kb on + strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.952 kb on + strand, within ABZR87_RS01375at 287.953 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.357 kb on + strand, within ABZR87_RS01375at 288.741 kb on + strandat 288.741 kb on + strandat 288.742 kb on - strandat 288.742 kb on - strandat 288.742 kb on - strandat 288.793 kb on + strandat 288.793 kb on + strandat 288.794 kb on - strandat 288.844 kb on + strandat 288.844 kb on + strandat 288.844 kb on + strandat 288.845 kb on - strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.875 kb on - strandat 289.028 kb on - strand, within ABZR87_RS01380at 289.076 kb on - strand, within ABZR87_RS01380at 289.076 kb on - strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.131 kb on + strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.292 kb on - strand, within ABZR87_RS01380at 289.292 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.403 kb on - strand, within ABZR87_RS01380at 289.403 kb on - strand, within ABZR87_RS01380at 289.468 kb on + strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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286,625 + ABZR87_RS01370 0.26 -0.0
286,625 + ABZR87_RS01370 0.26 +1.6
286,626 - ABZR87_RS01370 0.26 +4.6
286,626 - ABZR87_RS01370 0.26 +2.4
286,688 + ABZR87_RS01370 0.30 +1.2
286,688 + ABZR87_RS01370 0.30 -1.6
286,688 + ABZR87_RS01370 0.30 +0.6
286,688 + ABZR87_RS01370 0.30 +0.1
286,688 + ABZR87_RS01370 0.30 -0.2
286,689 - ABZR87_RS01370 0.31 +3.5
286,689 - ABZR87_RS01370 0.31 +2.8
286,689 - ABZR87_RS01370 0.31 +3.5
286,689 - ABZR87_RS01370 0.31 +3.2
286,689 - ABZR87_RS01370 0.31 +3.2
286,689 - ABZR87_RS01370 0.31 +3.3
286,689 - ABZR87_RS01370 0.31 +3.5
286,689 - ABZR87_RS01370 0.31 +2.9
286,689 - ABZR87_RS01370 0.31 +3.6
286,689 - ABZR87_RS01370 0.31 +4.1
286,799 + ABZR87_RS01370 0.39 -1.6
286,799 + ABZR87_RS01370 0.39 -1.0
286,799 + ABZR87_RS01370 0.39 -2.4
286,799 + ABZR87_RS01370 0.39 +1.5
286,805 + ABZR87_RS01370 0.39 -0.9
286,805 + ABZR87_RS01370 0.39 +1.2
286,805 + ABZR87_RS01370 0.39 +0.9
286,805 + ABZR87_RS01370 0.39 +2.4
286,806 - ABZR87_RS01370 0.39 +3.8
286,806 - ABZR87_RS01370 0.39 +3.8
286,806 - ABZR87_RS01370 0.39 +3.2
286,806 - ABZR87_RS01370 0.39 +2.8
286,806 - ABZR87_RS01370 0.39 +3.1
286,806 - ABZR87_RS01370 0.39 +3.8
286,806 - ABZR87_RS01370 0.39 +3.6
287,132 + ABZR87_RS01370 0.64 +0.1
287,133 - ABZR87_RS01370 0.64 +3.6
287,295 + ABZR87_RS01370 0.76 -1.1
287,296 - ABZR87_RS01370 0.76 +1.8
287,517 - +2.4
287,652 + +2.3
287,653 - +3.7
287,653 - +3.2
287,709 + +3.5
287,883 + ABZR87_RS01375 0.24 +3.4
287,883 + ABZR87_RS01375 0.24 +3.0
287,884 - ABZR87_RS01375 0.24 +3.4
287,884 - ABZR87_RS01375 0.24 +3.7
287,884 - ABZR87_RS01375 0.24 +3.8
287,884 - ABZR87_RS01375 0.24 +3.2
287,952 + ABZR87_RS01375 0.30 +2.9
287,953 - ABZR87_RS01375 0.30 +3.0
288,205 - ABZR87_RS01375 0.53 +3.9
288,205 - ABZR87_RS01375 0.53 +3.4
288,253 - ABZR87_RS01375 0.57 +3.4
288,253 - ABZR87_RS01375 0.57 +3.5
288,321 + ABZR87_RS01375 0.63 +3.3
288,321 + ABZR87_RS01375 0.63 +3.5
288,321 + ABZR87_RS01375 0.63 +3.2
288,321 + ABZR87_RS01375 0.63 +4.6
288,322 - ABZR87_RS01375 0.64 +3.7
288,322 - ABZR87_RS01375 0.64 +3.5
288,357 + ABZR87_RS01375 0.67 +3.1
288,741 + -0.3
288,741 + -0.5
288,742 - +1.7
288,742 - +1.0
288,742 - +0.5
288,793 + +0.0
288,793 + +0.1
288,794 - +1.2
288,844 + +1.2
288,844 + +1.4
288,844 + +1.2
288,845 - +0.9
288,874 + +0.8
288,874 + +0.5
288,874 + +0.8
288,874 + +0.0
288,875 - +1.4
289,028 - ABZR87_RS01380 0.22 +0.7
289,076 - ABZR87_RS01380 0.27 +0.9
289,076 - ABZR87_RS01380 0.27 +0.0
289,129 + ABZR87_RS01380 0.32 +0.5
289,129 + ABZR87_RS01380 0.32 +1.6
289,129 + ABZR87_RS01380 0.32 +2.2
289,130 - ABZR87_RS01380 0.32 +0.2
289,130 - ABZR87_RS01380 0.32 +1.4
289,130 - ABZR87_RS01380 0.32 -0.8
289,131 + ABZR87_RS01380 0.32 +0.8
289,132 - ABZR87_RS01380 0.32 +1.4
289,132 - ABZR87_RS01380 0.32 -0.9
289,132 - ABZR87_RS01380 0.32 +1.4
289,132 - ABZR87_RS01380 0.32 +1.4
289,132 - ABZR87_RS01380 0.32 +0.8
289,132 - ABZR87_RS01380 0.32 +1.5
289,132 - ABZR87_RS01380 0.32 +0.8
289,292 - ABZR87_RS01380 0.48 +0.6
289,292 - ABZR87_RS01380 0.48 +1.9
289,337 - ABZR87_RS01380 0.52 +0.2
289,337 - ABZR87_RS01380 0.52 +1.3
289,337 - ABZR87_RS01380 0.52 +1.8
289,403 - ABZR87_RS01380 0.59 -0.8
289,403 - ABZR87_RS01380 0.59 -2.0
289,468 + ABZR87_RS01380 0.65 +0.6
289,469 - ABZR87_RS01380 0.66 -0.5
289,469 - ABZR87_RS01380 0.66 +1.4
289,469 - ABZR87_RS01380 0.66 +1.6
289,469 - ABZR87_RS01380 0.66 -1.1

Or see this region's nucleotide sequence