Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01235 and ABZR87_RS01240 are separated by 67 nucleotides ABZR87_RS01240 and ABZR87_RS01245 are separated by 127 nucleotides ABZR87_RS01245 and ABZR87_RS01250 are separated by 173 nucleotides
ABZR87_RS01235: ABZR87_RS01235 - 4-hydroxybenzoate octaprenyltransferase, at 255,547 to 256,422
_RS01235
ABZR87_RS01240: ABZR87_RS01240 - catalase/peroxidase HPI, at 256,490 to 258,655
_RS01240
ABZR87_RS01245: ABZR87_RS01245 - Dps family protein, at 258,783 to 259,283
_RS01245
ABZR87_RS01250: ABZR87_RS01250 - hypothetical protein, at 259,457 to 259,699
_RS01250
Position (kb) 256
257
258
259 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 255.500 kb on + strand at 255.548 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.560 kb on + strand at 255.561 kb on - strand at 255.561 kb on - strand at 256.383 kb on - strand at 256.471 kb on + strand at 256.471 kb on + strand at 256.471 kb on + strand at 256.471 kb on + strand at 256.472 kb on - strand at 256.472 kb on - strand at 256.472 kb on - strand at 256.472 kb on - strand at 256.472 kb on - strand at 256.491 kb on + strand at 256.492 kb on - strand at 256.492 kb on - strand at 256.571 kb on - strand at 256.680 kb on + strand at 256.680 kb on + strand at 256.681 kb on - strand at 256.681 kb on - strand at 256.689 kb on + strand at 256.689 kb on + strand at 256.689 kb on + strand at 256.689 kb on + strand at 256.689 kb on + strand at 256.689 kb on + strand at 256.690 kb on - strand at 256.690 kb on - strand at 256.690 kb on - strand at 256.690 kb on - strand at 256.690 kb on - strand at 256.690 kb on - strand at 256.690 kb on - strand at 256.923 kb on + strand, within ABZR87_RS01240 at 257.060 kb on - strand, within ABZR87_RS01240 at 257.344 kb on + strand, within ABZR87_RS01240 at 257.344 kb on + strand, within ABZR87_RS01240 at 257.345 kb on - strand, within ABZR87_RS01240 at 257.404 kb on - strand, within ABZR87_RS01240 at 257.404 kb on - strand, within ABZR87_RS01240 at 257.512 kb on - strand, within ABZR87_RS01240 at 257.651 kb on + strand, within ABZR87_RS01240 at 257.661 kb on + strand, within ABZR87_RS01240 at 257.661 kb on + strand, within ABZR87_RS01240 at 257.661 kb on + strand, within ABZR87_RS01240 at 257.662 kb on - strand, within ABZR87_RS01240 at 257.662 kb on - strand, within ABZR87_RS01240 at 257.685 kb on + strand, within ABZR87_RS01240 at 257.685 kb on + strand, within ABZR87_RS01240 at 257.685 kb on + strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.686 kb on - strand, within ABZR87_RS01240 at 257.994 kb on + strand, within ABZR87_RS01240 at 257.994 kb on + strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 258.090 kb on + strand, within ABZR87_RS01240 at 258.091 kb on - strand, within ABZR87_RS01240 at 258.091 kb on - strand, within ABZR87_RS01240 at 258.219 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.346 kb on - strand, within ABZR87_RS01240 at 258.346 kb on - strand, within ABZR87_RS01240 at 258.346 kb on - strand, within ABZR87_RS01240 at 258.391 kb on - strand, within ABZR87_RS01240 at 258.391 kb on - strand, within ABZR87_RS01240 at 258.466 kb on - strand at 258.492 kb on + strand at 258.493 kb on - strand at 258.668 kb on + strand at 258.668 kb on + strand at 258.784 kb on + strand at 258.784 kb on + strand at 258.784 kb on + strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.966 kb on - strand, within ABZR87_RS01245 at 258.966 kb on - strand, within ABZR87_RS01245 at 258.966 kb on - strand, within ABZR87_RS01245 at 259.009 kb on + strand, within ABZR87_RS01245 at 259.009 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.163 kb on - strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.295 kb on + strand at 259.296 kb on - strand at 259.357 kb on - strand at 259.412 kb on + strand at 259.412 kb on + strand at 259.413 kb on - strand at 259.477 kb on + strand at 259.477 kb on + strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.498 kb on + strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.521 kb on - strand, within ABZR87_RS01250
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 255,500 + +0.9 255,548 + -1.5 255,560 + +0.0 255,560 + -0.2 255,560 + +0.1 255,560 + +0.1 255,561 - -0.7 255,561 - +0.2 256,383 - -3.1 256,471 + -0.5 256,471 + +0.3 256,471 + +0.1 256,471 + -2.8 256,472 - -0.8 256,472 - +1.4 256,472 - -0.5 256,472 - -0.4 256,472 - -0.4 256,491 + -0.7 256,492 - -0.7 256,492 - -0.4 256,571 - +1.8 256,680 + -2.2 256,680 + -2.6 256,681 - -2.8 256,681 - -2.6 256,689 + -2.5 256,689 + -2.2 256,689 + -1.8 256,689 + -1.7 256,689 + -0.9 256,689 + -3.0 256,690 - +1.2 256,690 - -2.2 256,690 - -1.1 256,690 - -2.6 256,690 - -2.4 256,690 - -1.8 256,690 - -3.5 256,923 + ABZR87_RS01240 0.20 -1.7 257,060 - ABZR87_RS01240 0.26 -1.4 257,344 + ABZR87_RS01240 0.39 -1.1 257,344 + ABZR87_RS01240 0.39 -2.9 257,345 - ABZR87_RS01240 0.39 -2.7 257,404 - ABZR87_RS01240 0.42 -2.6 257,404 - ABZR87_RS01240 0.42 +2.8 257,512 - ABZR87_RS01240 0.47 -3.1 257,651 + ABZR87_RS01240 0.54 -2.1 257,661 + ABZR87_RS01240 0.54 -1.6 257,661 + ABZR87_RS01240 0.54 -1.1 257,661 + ABZR87_RS01240 0.54 -1.4 257,662 - ABZR87_RS01240 0.54 -1.9 257,662 - ABZR87_RS01240 0.54 -3.7 257,685 + ABZR87_RS01240 0.55 -4.0 257,685 + ABZR87_RS01240 0.55 -2.8 257,685 + ABZR87_RS01240 0.55 -0.2 257,686 - ABZR87_RS01240 0.55 -2.2 257,686 - ABZR87_RS01240 0.55 -3.7 257,686 - ABZR87_RS01240 0.55 -2.4 257,686 - ABZR87_RS01240 0.55 -1.3 257,686 - ABZR87_RS01240 0.55 -1.0 257,686 - ABZR87_RS01240 0.55 -0.7 257,686 - ABZR87_RS01240 0.55 +0.8 257,994 + ABZR87_RS01240 0.69 -3.2 257,994 + ABZR87_RS01240 0.69 -3.0 257,995 - ABZR87_RS01240 0.69 +0.2 257,995 - ABZR87_RS01240 0.69 -1.2 257,995 - ABZR87_RS01240 0.69 -1.7 257,995 - ABZR87_RS01240 0.69 -1.2 258,090 + ABZR87_RS01240 0.74 -2.1 258,091 - ABZR87_RS01240 0.74 -1.7 258,091 - ABZR87_RS01240 0.74 -3.1 258,219 + ABZR87_RS01240 0.80 -0.3 258,345 + ABZR87_RS01240 0.86 -0.1 258,345 + ABZR87_RS01240 0.86 -3.3 258,345 + ABZR87_RS01240 0.86 -1.9 258,345 + ABZR87_RS01240 0.86 -2.1 258,345 + ABZR87_RS01240 0.86 -1.5 258,346 - ABZR87_RS01240 0.86 -1.6 258,346 - ABZR87_RS01240 0.86 -3.1 258,346 - ABZR87_RS01240 0.86 -2.6 258,391 - ABZR87_RS01240 0.88 -2.5 258,391 - ABZR87_RS01240 0.88 -2.2 258,466 - -2.6 258,492 + -1.2 258,493 - -1.4 258,668 + -1.4 258,668 + -0.7 258,784 + -1.1 258,784 + +0.2 258,784 + +0.2 258,785 - -2.1 258,785 - +1.7 258,785 - +0.3 258,785 - -1.5 258,785 - +1.7 258,785 - +0.7 258,966 - ABZR87_RS01245 0.37 -1.0 258,966 - ABZR87_RS01245 0.37 +1.8 258,966 - ABZR87_RS01245 0.37 -0.1 259,009 + ABZR87_RS01245 0.45 +3.8 259,009 + ABZR87_RS01245 0.45 +0.6 259,084 + ABZR87_RS01245 0.60 +0.8 259,084 + ABZR87_RS01245 0.60 +1.8 259,084 + ABZR87_RS01245 0.60 +2.2 259,084 + ABZR87_RS01245 0.60 +3.8 259,084 + ABZR87_RS01245 0.60 +3.8 259,085 - ABZR87_RS01245 0.60 -1.5 259,085 - ABZR87_RS01245 0.60 -0.7 259,085 - ABZR87_RS01245 0.60 +1.2 259,085 - ABZR87_RS01245 0.60 -0.7 259,085 - ABZR87_RS01245 0.60 +1.0 259,147 + ABZR87_RS01245 0.73 +2.8 259,147 + ABZR87_RS01245 0.73 +3.8 259,147 + ABZR87_RS01245 0.73 +1.5 259,147 + ABZR87_RS01245 0.73 +2.2 259,147 + ABZR87_RS01245 0.73 +0.5 259,148 - ABZR87_RS01245 0.73 -0.8 259,148 - ABZR87_RS01245 0.73 -1.6 259,148 - ABZR87_RS01245 0.73 -0.7 259,148 - ABZR87_RS01245 0.73 -0.1 259,162 + ABZR87_RS01245 0.76 +1.2 259,162 + ABZR87_RS01245 0.76 +1.5 259,162 + ABZR87_RS01245 0.76 +1.8 259,163 - ABZR87_RS01245 0.76 -1.8 259,171 + ABZR87_RS01245 0.77 +3.8 259,171 + ABZR87_RS01245 0.77 +1.5 259,172 - ABZR87_RS01245 0.78 +0.6 259,172 - ABZR87_RS01245 0.78 +0.1 259,172 - ABZR87_RS01245 0.78 -1.1 259,176 - ABZR87_RS01245 0.78 -0.6 259,176 - ABZR87_RS01245 0.78 -1.1 259,295 + +0.3 259,296 - +0.5 259,357 - -0.6 259,412 + +0.5 259,412 + +0.8 259,413 - +0.1 259,477 + -0.1 259,477 + +0.5 259,478 - -3.3 259,478 - -0.7 259,478 - -1.5 259,478 - -2.5 259,498 + ABZR87_RS01250 0.17 -0.4 259,499 - ABZR87_RS01250 0.17 +0.3 259,499 - ABZR87_RS01250 0.17 -1.7 259,499 - ABZR87_RS01250 0.17 +0.2 259,499 - ABZR87_RS01250 0.17 -0.3 259,520 + ABZR87_RS01250 0.26 -2.1 259,520 + ABZR87_RS01250 0.26 -0.6 259,520 + ABZR87_RS01250 0.26 +2.2 259,521 - ABZR87_RS01250 0.26 -0.5
Or see this region's nucleotide sequence