Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01030 and ABZR87_RS01035 are separated by 154 nucleotides ABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotides ABZR87_RS01040 and ABZR87_RS01045 overlap by 4 nucleotides
ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117
_RS01030
ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985
_RS01035
ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862
_RS01040
ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650
_RS01045
Position (kb) 207
208 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 206.431 kb on + strand, within ABZR87_RS01030 at 206.434 kb on - strand, within ABZR87_RS01030 at 206.434 kb on - strand, within ABZR87_RS01030 at 206.464 kb on - strand, within ABZR87_RS01030 at 206.464 kb on - strand, within ABZR87_RS01030 at 206.606 kb on + strand, within ABZR87_RS01030 at 206.606 kb on + strand, within ABZR87_RS01030 at 206.606 kb on + strand, within ABZR87_RS01030 at 206.607 kb on - strand, within ABZR87_RS01030 at 206.607 kb on - strand, within ABZR87_RS01030 at 206.639 kb on + strand, within ABZR87_RS01030 at 206.639 kb on + strand, within ABZR87_RS01030 at 206.640 kb on - strand, within ABZR87_RS01030 at 206.672 kb on + strand, within ABZR87_RS01030 at 206.672 kb on + strand, within ABZR87_RS01030 at 206.672 kb on + strand, within ABZR87_RS01030 at 206.673 kb on - strand, within ABZR87_RS01030 at 206.673 kb on - strand, within ABZR87_RS01030 at 206.702 kb on + strand, within ABZR87_RS01030 at 206.702 kb on + strand, within ABZR87_RS01030 at 206.703 kb on - strand, within ABZR87_RS01030 at 206.703 kb on - strand, within ABZR87_RS01030 at 206.703 kb on - strand, within ABZR87_RS01030 at 206.934 kb on - strand, within ABZR87_RS01030 at 207.071 kb on + strand at 207.072 kb on - strand at 207.169 kb on + strand at 207.198 kb on + strand at 207.198 kb on + strand at 207.199 kb on - strand at 207.199 kb on - strand at 207.199 kb on - strand at 207.506 kb on + strand, within ABZR87_RS01035 at 207.740 kb on + strand, within ABZR87_RS01035 at 207.740 kb on + strand, within ABZR87_RS01035 at 207.740 kb on + strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.780 kb on - strand, within ABZR87_RS01035 at 207.780 kb on - strand, within ABZR87_RS01035 at 207.780 kb on - strand, within ABZR87_RS01035 at 207.816 kb on - strand, within ABZR87_RS01035 at 208.288 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.453 kb on + strand, within ABZR87_RS01040 at 208.521 kb on + strand, within ABZR87_RS01040 at 208.522 kb on - strand, within ABZR87_RS01040 at 208.726 kb on - strand, within ABZR87_RS01040 at 208.901 kb on + strand at 208.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 206,431 + ABZR87_RS01030 0.60 -1.0 206,434 - ABZR87_RS01030 0.60 +0.8 206,434 - ABZR87_RS01030 0.60 +0.7 206,464 - ABZR87_RS01030 0.62 +1.5 206,464 - ABZR87_RS01030 0.62 -1.0 206,606 + ABZR87_RS01030 0.70 +0.1 206,606 + ABZR87_RS01030 0.70 +2.5 206,606 + ABZR87_RS01030 0.70 +2.9 206,607 - ABZR87_RS01030 0.70 -0.6 206,607 - ABZR87_RS01030 0.70 -0.4 206,639 + ABZR87_RS01030 0.72 +1.1 206,639 + ABZR87_RS01030 0.72 -0.8 206,640 - ABZR87_RS01030 0.72 +1.5 206,672 + ABZR87_RS01030 0.74 -0.6 206,672 + ABZR87_RS01030 0.74 +0.4 206,672 + ABZR87_RS01030 0.74 -1.4 206,673 - ABZR87_RS01030 0.74 -1.4 206,673 - ABZR87_RS01030 0.74 +0.1 206,702 + ABZR87_RS01030 0.76 -0.9 206,702 + ABZR87_RS01030 0.76 -1.2 206,703 - ABZR87_RS01030 0.76 +0.5 206,703 - ABZR87_RS01030 0.76 +1.0 206,703 - ABZR87_RS01030 0.76 -1.9 206,934 - ABZR87_RS01030 0.89 -2.0 207,071 + +0.0 207,072 - +2.2 207,169 + +0.4 207,198 + -0.4 207,198 + +0.2 207,199 - +1.6 207,199 - +0.2 207,199 - +1.0 207,506 + ABZR87_RS01035 0.33 +7.3 207,740 + ABZR87_RS01035 0.66 +5.6 207,740 + ABZR87_RS01035 0.66 +6.4 207,740 + ABZR87_RS01035 0.66 +6.9 207,741 - ABZR87_RS01035 0.66 +8.0 207,741 - ABZR87_RS01035 0.66 +7.4 207,741 - ABZR87_RS01035 0.66 +6.4 207,741 - ABZR87_RS01035 0.66 +6.5 207,780 - ABZR87_RS01035 0.71 +7.5 207,780 - ABZR87_RS01035 0.71 +6.4 207,780 - ABZR87_RS01035 0.71 +9.2 207,816 - ABZR87_RS01035 0.76 +6.5 208,288 + ABZR87_RS01040 0.34 +0.3 208,369 + ABZR87_RS01040 0.43 -0.7 208,369 + ABZR87_RS01040 0.43 -0.3 208,369 + ABZR87_RS01040 0.43 -2.1 208,369 + ABZR87_RS01040 0.43 +0.6 208,370 - ABZR87_RS01040 0.43 +0.7 208,370 - ABZR87_RS01040 0.43 +0.3 208,370 - ABZR87_RS01040 0.43 -0.1 208,370 - ABZR87_RS01040 0.43 -1.8 208,429 + ABZR87_RS01040 0.50 +0.3 208,429 + ABZR87_RS01040 0.50 -0.3 208,429 + ABZR87_RS01040 0.50 +1.1 208,430 - ABZR87_RS01040 0.50 +0.9 208,430 - ABZR87_RS01040 0.50 +0.6 208,430 - ABZR87_RS01040 0.50 -0.5 208,453 + ABZR87_RS01040 0.53 -0.3 208,521 + ABZR87_RS01040 0.61 +0.4 208,522 - ABZR87_RS01040 0.61 -2.1 208,726 - ABZR87_RS01040 0.84 -0.1 208,901 + -1.9 208,902 - -0.5
Or see this region's nucleotide sequence