Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00955

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00945 and ABZR87_RS00950 are separated by 60 nucleotidesABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotidesABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotidesABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642 _RS00945 ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521 _RS00950 ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240 _RS00955 ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935 _RS00960 ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.709 kb on + strandat 188.709 kb on + strandat 188.709 kb on + strandat 189.674 kb on + strand, within ABZR87_RS00955at 189.674 kb on + strand, within ABZR87_RS00955at 189.674 kb on + strand, within ABZR87_RS00955at 189.675 kb on - strand, within ABZR87_RS00955at 189.675 kb on - strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 190.220 kb on + strandat 190.220 kb on + strandat 190.221 kb on - strandat 190.221 kb on - strandat 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.513 kb on + strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.532 kb on + strand, within ABZR87_RS00960at 190.550 kb on - strand, within ABZR87_RS00960at 190.880 kb on + strandat 190.880 kb on + strandat 190.880 kb on + strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.881 kb on - strandat 190.934 kb on - strandat 190.945 kb on + strandat 190.946 kb on - strandat 190.946 kb on - strandat 190.946 kb on - strandat 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.210 kb on + strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965at 191.211 kb on - strand, within ABZR87_RS00965

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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188,709 + -1.3
188,709 + +0.3
188,709 + +0.8
189,674 + ABZR87_RS00955 0.20 -0.2
189,674 + ABZR87_RS00955 0.20 +0.3
189,674 + ABZR87_RS00955 0.20 +1.6
189,675 - ABZR87_RS00955 0.20 -0.6
189,675 - ABZR87_RS00955 0.20 -0.4
189,773 + ABZR87_RS00955 0.34 -2.3
189,773 + ABZR87_RS00955 0.34 -0.6
189,773 + ABZR87_RS00955 0.34 +1.2
189,773 + ABZR87_RS00955 0.34 -1.4
189,773 + ABZR87_RS00955 0.34 -0.6
189,773 + ABZR87_RS00955 0.34 -1.9
189,773 + ABZR87_RS00955 0.34 -0.9
189,774 - ABZR87_RS00955 0.34 +1.3
189,774 - ABZR87_RS00955 0.34 -1.7
189,774 - ABZR87_RS00955 0.34 +0.9
190,220 + +0.2
190,220 + +0.7
190,221 - +0.7
190,221 - -0.7
190,495 + ABZR87_RS00960 0.37 -1.4
190,495 + ABZR87_RS00960 0.37 +0.3
190,495 + ABZR87_RS00960 0.37 +0.4
190,495 + ABZR87_RS00960 0.37 +0.5
190,495 + ABZR87_RS00960 0.37 -0.1
190,495 + ABZR87_RS00960 0.37 -0.4
190,495 + ABZR87_RS00960 0.37 +0.3
190,495 + ABZR87_RS00960 0.37 +1.1
190,495 + ABZR87_RS00960 0.37 -1.3
190,495 + ABZR87_RS00960 0.37 -1.2
190,495 + ABZR87_RS00960 0.37 -2.6
190,496 - ABZR87_RS00960 0.37 +0.4
190,496 - ABZR87_RS00960 0.37 -1.4
190,496 - ABZR87_RS00960 0.37 -1.4
190,496 - ABZR87_RS00960 0.37 -2.6
190,496 - ABZR87_RS00960 0.37 -1.8
190,496 - ABZR87_RS00960 0.37 -2.4
190,513 + ABZR87_RS00960 0.39 -3.4
190,514 - ABZR87_RS00960 0.40 +0.1
190,514 - ABZR87_RS00960 0.40 -1.0
190,514 - ABZR87_RS00960 0.40 -0.4
190,514 - ABZR87_RS00960 0.40 -1.9
190,532 + ABZR87_RS00960 0.42 -1.7
190,550 - ABZR87_RS00960 0.45 -1.9
190,880 + -1.4
190,880 + -1.0
190,880 + -0.6
190,881 - -0.2
190,881 - -0.9
190,881 - +0.6
190,881 - +0.6
190,934 - -0.2
190,945 + -0.3
190,946 - +0.1
190,946 - +1.6
190,946 - -2.3
191,210 + ABZR87_RS00965 0.17 +0.7
191,210 + ABZR87_RS00965 0.17 -0.1
191,210 + ABZR87_RS00965 0.17 -0.1
191,210 + ABZR87_RS00965 0.17 -0.9
191,211 - ABZR87_RS00965 0.17 +2.5
191,211 - ABZR87_RS00965 0.17 -1.1
191,211 - ABZR87_RS00965 0.17 -0.4
191,211 - ABZR87_RS00965 0.17 -0.2

Or see this region's nucleotide sequence