Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00880

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00870 and ABZR87_RS00875 are separated by 6 nucleotidesABZR87_RS00875 and ABZR87_RS00880 overlap by 4 nucleotidesABZR87_RS00880 and ABZR87_RS00885 are separated by 79 nucleotidesABZR87_RS00885 and ABZR87_RS00890 are separated by 10 nucleotides ABZR87_RS00870: ABZR87_RS00870 - DNA mismatch repair endonuclease MutL, at 174,500 to 176,407 _RS00870 ABZR87_RS00875: ABZR87_RS00875 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 176,414 to 177,391 _RS00875 ABZR87_RS00880: ABZR87_RS00880 - GNAT family N-acetyltransferase, at 177,388 to 177,915 _RS00880 ABZR87_RS00885: ABZR87_RS00885 - 2OG-Fe(II) oxygenase, at 177,995 to 178,735 _RS00885 ABZR87_RS00890: ABZR87_RS00890 - DNA oxidative demethylase AlkB, at 178,746 to 179,402 _RS00890 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.549 kb on + strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.741 kb on + strand, within ABZR87_RS00875at 176.741 kb on + strand, within ABZR87_RS00875at 176.742 kb on - strand, within ABZR87_RS00875at 176.742 kb on - strand, within ABZR87_RS00875at 176.742 kb on - strand, within ABZR87_RS00875at 176.744 kb on + strand, within ABZR87_RS00875at 176.744 kb on + strand, within ABZR87_RS00875at 176.744 kb on + strand, within ABZR87_RS00875at 176.890 kb on - strand, within ABZR87_RS00875at 176.912 kb on - strand, within ABZR87_RS00875at 176.912 kb on - strand, within ABZR87_RS00875at 176.933 kb on + strand, within ABZR87_RS00875at 177.021 kb on - strand, within ABZR87_RS00875at 177.201 kb on - strand, within ABZR87_RS00875at 177.335 kb on + strandat 177.336 kb on - strandat 177.482 kb on - strand, within ABZR87_RS00880at 177.553 kb on + strand, within ABZR87_RS00880at 177.554 kb on - strand, within ABZR87_RS00880at 177.554 kb on - strand, within ABZR87_RS00880at 177.649 kb on + strand, within ABZR87_RS00880at 177.649 kb on + strand, within ABZR87_RS00880at 177.799 kb on + strand, within ABZR87_RS00880at 177.799 kb on + strand, within ABZR87_RS00880at 177.799 kb on + strand, within ABZR87_RS00880at 177.800 kb on - strand, within ABZR87_RS00880at 177.800 kb on - strand, within ABZR87_RS00880at 177.879 kb on + strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.961 kb on - strandat 177.961 kb on - strandat 177.961 kb on - strandat 177.971 kb on + strandat 177.971 kb on + strandat 177.972 kb on - strandat 177.972 kb on - strandat 177.972 kb on - strandat 177.994 kb on + strandat 177.995 kb on - strandat 177.995 kb on - strandat 177.995 kb on - strandat 177.995 kb on - strandat 178.047 kb on + strandat 178.048 kb on - strandat 178.170 kb on + strand, within ABZR87_RS00885at 178.171 kb on - strand, within ABZR87_RS00885at 178.171 kb on - strand, within ABZR87_RS00885at 178.172 kb on + strand, within ABZR87_RS00885at 178.172 kb on + strand, within ABZR87_RS00885at 178.173 kb on - strand, within ABZR87_RS00885at 178.220 kb on + strand, within ABZR87_RS00885at 178.220 kb on + strand, within ABZR87_RS00885at 178.221 kb on - strand, within ABZR87_RS00885at 178.221 kb on - strand, within ABZR87_RS00885at 178.226 kb on + strand, within ABZR87_RS00885at 178.226 kb on + strand, within ABZR87_RS00885at 178.227 kb on - strand, within ABZR87_RS00885at 178.227 kb on - strand, within ABZR87_RS00885at 178.227 kb on - strand, within ABZR87_RS00885at 178.415 kb on + strand, within ABZR87_RS00885at 178.415 kb on + strand, within ABZR87_RS00885at 178.416 kb on - strand, within ABZR87_RS00885at 178.430 kb on + strand, within ABZR87_RS00885at 178.430 kb on + strand, within ABZR87_RS00885at 178.430 kb on + strand, within ABZR87_RS00885at 178.431 kb on - strand, within ABZR87_RS00885at 178.455 kb on - strand, within ABZR87_RS00885at 178.455 kb on - strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.650 kb on - strand, within ABZR87_RS00885at 178.650 kb on - strand, within ABZR87_RS00885at 178.702 kb on + strandat 178.702 kb on + strandat 178.702 kb on + strandat 178.702 kb on + strandat 178.703 kb on - strandat 178.703 kb on - strandat 178.733 kb on + strandat 178.733 kb on + strandat 178.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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176,549 + ABZR87_RS00875 0.14 -1.0
176,646 - ABZR87_RS00875 0.24 +0.7
176,646 - ABZR87_RS00875 0.24 +0.7
176,646 - ABZR87_RS00875 0.24 +0.5
176,646 - ABZR87_RS00875 0.24 -0.3
176,741 + ABZR87_RS00875 0.33 -0.4
176,741 + ABZR87_RS00875 0.33 +0.4
176,742 - ABZR87_RS00875 0.34 +2.2
176,742 - ABZR87_RS00875 0.34 +0.4
176,742 - ABZR87_RS00875 0.34 -1.6
176,744 + ABZR87_RS00875 0.34 +0.7
176,744 + ABZR87_RS00875 0.34 +0.2
176,744 + ABZR87_RS00875 0.34 +1.0
176,890 - ABZR87_RS00875 0.49 -0.5
176,912 - ABZR87_RS00875 0.51 -0.1
176,912 - ABZR87_RS00875 0.51 +1.0
176,933 + ABZR87_RS00875 0.53 +0.1
177,021 - ABZR87_RS00875 0.62 -0.3
177,201 - ABZR87_RS00875 0.80 -0.8
177,335 + +0.1
177,336 - +1.5
177,482 - ABZR87_RS00880 0.18 -2.0
177,553 + ABZR87_RS00880 0.31 +1.2
177,554 - ABZR87_RS00880 0.31 +0.4
177,554 - ABZR87_RS00880 0.31 -1.0
177,649 + ABZR87_RS00880 0.49 +2.2
177,649 + ABZR87_RS00880 0.49 +1.1
177,799 + ABZR87_RS00880 0.78 +0.1
177,799 + ABZR87_RS00880 0.78 +0.2
177,799 + ABZR87_RS00880 0.78 -0.5
177,800 - ABZR87_RS00880 0.78 +0.5
177,800 - ABZR87_RS00880 0.78 +1.6
177,879 + -0.8
177,960 + -2.4
177,960 + +0.4
177,960 + +1.2
177,960 + -0.7
177,961 - -0.9
177,961 - +0.5
177,961 - -1.7
177,971 + +1.6
177,971 + +1.8
177,972 - +0.4
177,972 - +0.4
177,972 - +0.3
177,994 + -0.4
177,995 - -0.5
177,995 - -2.7
177,995 - -1.3
177,995 - -1.5
178,047 + -0.2
178,048 - -1.5
178,170 + ABZR87_RS00885 0.24 +0.0
178,171 - ABZR87_RS00885 0.24 +1.4
178,171 - ABZR87_RS00885 0.24 -0.1
178,172 + ABZR87_RS00885 0.24 +1.0
178,172 + ABZR87_RS00885 0.24 -0.0
178,173 - ABZR87_RS00885 0.24 +0.3
178,220 + ABZR87_RS00885 0.30 -1.0
178,220 + ABZR87_RS00885 0.30 -0.2
178,221 - ABZR87_RS00885 0.30 -0.6
178,221 - ABZR87_RS00885 0.30 -0.6
178,226 + ABZR87_RS00885 0.31 -0.1
178,226 + ABZR87_RS00885 0.31 -1.0
178,227 - ABZR87_RS00885 0.31 -1.8
178,227 - ABZR87_RS00885 0.31 -0.1
178,227 - ABZR87_RS00885 0.31 -1.1
178,415 + ABZR87_RS00885 0.57 +1.2
178,415 + ABZR87_RS00885 0.57 -1.1
178,416 - ABZR87_RS00885 0.57 +0.0
178,430 + ABZR87_RS00885 0.59 +0.1
178,430 + ABZR87_RS00885 0.59 -1.1
178,430 + ABZR87_RS00885 0.59 +0.1
178,431 - ABZR87_RS00885 0.59 -0.5
178,455 - ABZR87_RS00885 0.62 -3.2
178,455 - ABZR87_RS00885 0.62 -0.5
178,649 + ABZR87_RS00885 0.88 -0.0
178,649 + ABZR87_RS00885 0.88 +0.2
178,649 + ABZR87_RS00885 0.88 -1.5
178,649 + ABZR87_RS00885 0.88 -0.7
178,650 - ABZR87_RS00885 0.88 -2.8
178,650 - ABZR87_RS00885 0.88 -1.2
178,702 + +0.2
178,702 + -0.4
178,702 + +1.7
178,702 + +0.0
178,703 - -1.9
178,703 - +0.3
178,733 + -0.3
178,733 + -1.0
178,733 + +0.9

Or see this region's nucleotide sequence