Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00650 and ABZR87_RS00655 are separated by 98 nucleotides ABZR87_RS00655 and ABZR87_RS00660 overlap by 4 nucleotides ABZR87_RS00660 and ABZR87_RS00665 overlap by 4 nucleotides ABZR87_RS00665 and ABZR87_RS00670 overlap by 4 nucleotides
ABZR87_RS00650: ABZR87_RS00650 - HU family DNA-binding protein, at 134,500 to 134,784
_RS00650
ABZR87_RS00655: ABZR87_RS00655 - HutD family protein, at 134,883 to 135,461
_RS00655
ABZR87_RS00660: ABZR87_RS00660 - formimidoylglutamase, at 135,458 to 136,417
_RS00660
ABZR87_RS00665: ABZR87_RS00665 - amino acid ABC transporter ATP-binding protein, at 136,414 to 137,214
_RS00665
ABZR87_RS00670: ABZR87_RS00670 - amino acid ABC transporter permease, at 137,211 to 137,879
_RS00670
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.462 kb on + strand at 134.462 kb on + strand at 134.782 kb on + strand at 134.783 kb on - strand at 134.783 kb on - strand at 134.783 kb on - strand at 134.991 kb on - strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.029 kb on - strand, within ABZR87_RS00655 at 135.029 kb on - strand, within ABZR87_RS00655 at 135.526 kb on - strand at 135.526 kb on - strand at 135.622 kb on - strand, within ABZR87_RS00660 at 135.622 kb on - strand, within ABZR87_RS00660 at 135.622 kb on - strand, within ABZR87_RS00660 at 135.687 kb on + strand, within ABZR87_RS00660 at 135.688 kb on - strand, within ABZR87_RS00660 at 135.688 kb on - strand, within ABZR87_RS00660 at 135.774 kb on + strand, within ABZR87_RS00660 at 135.775 kb on - strand, within ABZR87_RS00660 at 135.849 kb on + strand, within ABZR87_RS00660 at 135.849 kb on + strand, within ABZR87_RS00660 at 135.849 kb on + strand, within ABZR87_RS00660 at 135.849 kb on + strand, within ABZR87_RS00660 at 135.849 kb on + strand, within ABZR87_RS00660 at 135.849 kb on + strand, within ABZR87_RS00660 at 135.850 kb on - strand, within ABZR87_RS00660 at 135.850 kb on - strand, within ABZR87_RS00660 at 135.850 kb on - strand, within ABZR87_RS00660 at 135.863 kb on - strand, within ABZR87_RS00660 at 136.090 kb on + strand, within ABZR87_RS00660 at 136.091 kb on - strand, within ABZR87_RS00660 at 136.091 kb on - strand, within ABZR87_RS00660 at 136.091 kb on - strand, within ABZR87_RS00660 at 136.091 kb on - strand, within ABZR87_RS00660 at 136.621 kb on + strand, within ABZR87_RS00665 at 136.622 kb on - strand, within ABZR87_RS00665 at 136.622 kb on - strand, within ABZR87_RS00665 at 137.129 kb on + strand, within ABZR87_RS00665 at 137.129 kb on + strand, within ABZR87_RS00665 at 137.263 kb on + strand at 137.263 kb on + strand at 137.263 kb on + strand at 137.263 kb on + strand at 137.263 kb on + strand at 137.264 kb on - strand at 137.264 kb on - strand at 137.264 kb on - strand at 137.290 kb on + strand, within ABZR87_RS00670 at 137.290 kb on + strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.312 kb on - strand, within ABZR87_RS00670 at 137.330 kb on - strand, within ABZR87_RS00670
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 134,462 + -0.0 134,462 + -1.5 134,782 + +0.7 134,783 - +0.7 134,783 - +0.9 134,783 - +0.5 134,991 - ABZR87_RS00655 0.19 -1.6 135,028 + ABZR87_RS00655 0.25 -0.1 135,028 + ABZR87_RS00655 0.25 -0.3 135,028 + ABZR87_RS00655 0.25 -0.4 135,028 + ABZR87_RS00655 0.25 -1.4 135,029 - ABZR87_RS00655 0.25 +0.7 135,029 - ABZR87_RS00655 0.25 +2.0 135,526 - +0.1 135,526 - -0.8 135,622 - ABZR87_RS00660 0.17 +0.0 135,622 - ABZR87_RS00660 0.17 +0.0 135,622 - ABZR87_RS00660 0.17 +0.2 135,687 + ABZR87_RS00660 0.24 -1.5 135,688 - ABZR87_RS00660 0.24 -1.8 135,688 - ABZR87_RS00660 0.24 +1.2 135,774 + ABZR87_RS00660 0.33 -0.0 135,775 - ABZR87_RS00660 0.33 -1.8 135,849 + ABZR87_RS00660 0.41 +1.0 135,849 + ABZR87_RS00660 0.41 -1.1 135,849 + ABZR87_RS00660 0.41 -1.6 135,849 + ABZR87_RS00660 0.41 +1.1 135,849 + ABZR87_RS00660 0.41 -0.9 135,849 + ABZR87_RS00660 0.41 +0.7 135,850 - ABZR87_RS00660 0.41 -0.6 135,850 - ABZR87_RS00660 0.41 -2.1 135,850 - ABZR87_RS00660 0.41 -0.9 135,863 - ABZR87_RS00660 0.42 -0.8 136,090 + ABZR87_RS00660 0.66 +0.8 136,091 - ABZR87_RS00660 0.66 +1.7 136,091 - ABZR87_RS00660 0.66 +0.9 136,091 - ABZR87_RS00660 0.66 -1.4 136,091 - ABZR87_RS00660 0.66 +0.2 136,621 + ABZR87_RS00665 0.26 -0.5 136,622 - ABZR87_RS00665 0.26 +1.0 136,622 - ABZR87_RS00665 0.26 -0.7 137,129 + ABZR87_RS00665 0.89 -1.5 137,129 + ABZR87_RS00665 0.89 +0.8 137,263 + -0.5 137,263 + -1.0 137,263 + -0.7 137,263 + +0.9 137,263 + +0.9 137,264 - -0.7 137,264 - -2.2 137,264 - +0.9 137,290 + ABZR87_RS00670 0.12 -2.1 137,290 + ABZR87_RS00670 0.12 -0.3 137,291 - ABZR87_RS00670 0.12 +0.2 137,291 - ABZR87_RS00670 0.12 -1.1 137,291 - ABZR87_RS00670 0.12 -1.7 137,291 - ABZR87_RS00670 0.12 +0.3 137,312 - ABZR87_RS00670 0.15 +0.4 137,330 - ABZR87_RS00670 0.18 +1.1
Or see this region's nucleotide sequence