Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00460 and ABZR87_RS00465 are separated by 259 nucleotides ABZR87_RS00465 and ABZR87_RS00470 are separated by 278 nucleotides ABZR87_RS00470 and ABZR87_RS00475 are separated by 187 nucleotides
ABZR87_RS00460: ABZR87_RS00460 - NADP-dependent isocitrate dehydrogenase, at 95,213 to 96,463
_RS00460
ABZR87_RS00465: ABZR87_RS00465 - sorbitol dehydrogenase family protein, at 96,723 to 97,205
_RS00465
ABZR87_RS00470: ABZR87_RS00470 - hypothetical protein, at 97,484 to 97,693
_RS00470
ABZR87_RS00475: ABZR87_RS00475 - metallophosphoesterase, at 97,881 to 99,395
_RS00475
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.582 kb on - strand at 96.582 kb on - strand at 96.670 kb on + strand at 97.422 kb on + strand at 97.440 kb on + strand at 97.455 kb on + strand at 97.455 kb on + strand at 97.456 kb on - strand at 97.469 kb on - strand at 97.470 kb on + strand at 97.471 kb on - strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.821 kb on + strand at 97.822 kb on - strand at 97.840 kb on + strand at 97.841 kb on - strand at 97.841 kb on - strand at 97.841 kb on - strand at 98.118 kb on + strand, within ABZR87_RS00475 at 98.118 kb on + strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.120 kb on + strand, within ABZR87_RS00475 at 98.120 kb on + strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 96,582 - -0.3 96,582 - -0.1 96,670 + +0.1 97,422 + -0.3 97,440 + +0.4 97,455 + +0.7 97,455 + +1.0 97,456 - -1.5 97,469 - -0.5 97,470 + +0.8 97,471 - +0.5 97,691 + -3.1 97,691 + -2.7 97,691 + -0.4 97,691 + +0.0 97,691 + +0.5 97,692 - -0.7 97,692 - +0.2 97,692 - +1.2 97,692 - -0.9 97,692 - -1.7 97,692 - +0.6 97,692 - +0.7 97,692 - -0.9 97,692 - -1.8 97,749 + -1.3 97,749 + +0.3 97,749 + -0.2 97,749 + -0.3 97,749 + +0.9 97,749 + -2.0 97,750 - +0.9 97,750 - +2.6 97,750 - +0.5 97,750 - +0.5 97,750 - -0.8 97,750 - -0.3 97,750 - +0.1 97,750 - +0.3 97,821 + -0.3 97,822 - -0.8 97,840 + +0.3 97,841 - +1.0 97,841 - +0.5 97,841 - +2.2 98,118 + ABZR87_RS00475 0.16 -1.2 98,118 + ABZR87_RS00475 0.16 +0.9 98,119 - ABZR87_RS00475 0.16 +0.6 98,119 - ABZR87_RS00475 0.16 -0.9 98,119 - ABZR87_RS00475 0.16 -0.0 98,119 - ABZR87_RS00475 0.16 -2.3 98,119 - ABZR87_RS00475 0.16 +0.0 98,119 - ABZR87_RS00475 0.16 +0.3 98,119 - ABZR87_RS00475 0.16 -0.1 98,120 + ABZR87_RS00475 0.16 +0.4 98,120 + ABZR87_RS00475 0.16 +0.1 98,121 - ABZR87_RS00475 0.16 -1.0 98,121 - ABZR87_RS00475 0.16 -0.9 98,121 - ABZR87_RS00475 0.16 +1.0
Or see this region's nucleotide sequence