Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00090 and ABZR87_RS00095 overlap by 4 nucleotides ABZR87_RS00095 and ABZR87_RS00100 are separated by 542 nucleotides ABZR87_RS00100 and ABZR87_RS00105 are separated by 2 nucleotides
ABZR87_RS00090: ABZR87_RS00090 - iron ABC transporter permease, at 18,837 to 19,856
_RS00090
ABZR87_RS00095: ABZR87_RS00095 - TonB-dependent receptor, at 19,853 to 21,742
_RS00095
ABZR87_RS00100: ABZR87_RS00100 - hypothetical protein, at 22,285 to 22,605
_RS00100
ABZR87_RS00105: ABZR87_RS00105 - cell division protein ZapA, at 22,608 to 22,925
_RS00105
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.862 kb on + strand at 18.862 kb on + strand at 18.862 kb on + strand at 18.863 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.933 kb on - strand at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.250 kb on - strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.918 kb on - strand at 19.918 kb on - strand at 19.918 kb on - strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.923 kb on + strand at 19.935 kb on + strand at 19.935 kb on + strand at 19.936 kb on - strand at 20.023 kb on - strand at 20.185 kb on + strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.186 kb on - strand, within ABZR87_RS00095 at 20.211 kb on + strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.212 kb on - strand, within ABZR87_RS00095 at 20.227 kb on - strand, within ABZR87_RS00095 at 20.277 kb on + strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.278 kb on - strand, within ABZR87_RS00095 at 20.322 kb on + strand, within ABZR87_RS00095 at 20.322 kb on + strand, within ABZR87_RS00095 at 20.323 kb on - strand, within ABZR87_RS00095 at 20.370 kb on + strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.371 kb on - strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.439 kb on + strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.440 kb on - strand, within ABZR87_RS00095 at 20.530 kb on - strand, within ABZR87_RS00095 at 20.532 kb on + strand, within ABZR87_RS00095 at 20.532 kb on + strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.533 kb on - strand, within ABZR87_RS00095 at 20.614 kb on - strand, within ABZR87_RS00095 at 20.622 kb on + strand, within ABZR87_RS00095 at 20.623 kb on - strand, within ABZR87_RS00095 at 20.644 kb on + strand, within ABZR87_RS00095 at 20.644 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.655 kb on + strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.656 kb on - strand, within ABZR87_RS00095 at 20.874 kb on + strand, within ABZR87_RS00095 at 20.875 kb on - strand, within ABZR87_RS00095 at 20.943 kb on + strand, within ABZR87_RS00095 at 20.943 kb on + strand, within ABZR87_RS00095 at 20.943 kb on + strand, within ABZR87_RS00095 at 20.944 kb on - strand, within ABZR87_RS00095 at 20.971 kb on - strand, within ABZR87_RS00095 at 21.136 kb on + strand, within ABZR87_RS00095 at 21.136 kb on + strand, within ABZR87_RS00095 at 21.136 kb on + strand, within ABZR87_RS00095 at 21.137 kb on - strand, within ABZR87_RS00095 at 21.187 kb on + strand, within ABZR87_RS00095 at 21.188 kb on - strand, within ABZR87_RS00095 at 21.201 kb on + strand, within ABZR87_RS00095 at 21.202 kb on - strand, within ABZR87_RS00095 at 21.655 kb on + strand at 21.655 kb on + strand at 21.655 kb on + strand at 21.656 kb on - strand at 21.656 kb on - strand at 21.656 kb on - strand at 21.760 kb on + strand at 21.760 kb on + strand at 21.947 kb on + strand at 21.947 kb on + strand at 21.948 kb on - strand at 22.013 kb on - strand at 22.013 kb on - strand at 22.117 kb on + strand at 22.207 kb on - strand at 22.570 kb on - strand, within ABZR87_RS00100 at 22.570 kb on - strand, within ABZR87_RS00100 at 22.603 kb on + strand at 22.603 kb on + strand at 22.603 kb on + strand at 22.603 kb on + strand at 22.603 kb on + strand at 22.603 kb on + strand at 22.603 kb on + strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.604 kb on - strand at 22.650 kb on + strand, within ABZR87_RS00105 at 22.650 kb on + strand, within ABZR87_RS00105 at 22.650 kb on + strand, within ABZR87_RS00105 at 22.650 kb on + strand, within ABZR87_RS00105 at 22.650 kb on + strand, within ABZR87_RS00105 at 22.651 kb on - strand, within ABZR87_RS00105 at 22.651 kb on - strand, within ABZR87_RS00105 at 22.651 kb on - strand, within ABZR87_RS00105 at 22.651 kb on - strand, within ABZR87_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 18,862 + +1.1 18,862 + +1.1 18,862 + -2.0 18,863 - -0.5 18,894 - +0.1 18,894 - +0.9 18,894 - +0.8 18,894 - +0.2 18,933 - +1.7 19,112 - ABZR87_RS00090 0.27 -0.8 19,112 - ABZR87_RS00090 0.27 -0.2 19,112 - ABZR87_RS00090 0.27 +0.5 19,112 - ABZR87_RS00090 0.27 -1.1 19,112 - ABZR87_RS00090 0.27 -0.6 19,250 - ABZR87_RS00090 0.40 -0.7 19,561 + ABZR87_RS00090 0.71 -0.4 19,561 + ABZR87_RS00090 0.71 +1.1 19,561 + ABZR87_RS00090 0.71 -1.7 19,561 + ABZR87_RS00090 0.71 +1.8 19,561 + ABZR87_RS00090 0.71 +0.1 19,561 + ABZR87_RS00090 0.71 +0.0 19,917 + -0.8 19,917 + -0.2 19,917 + -1.7 19,918 - +0.4 19,918 - -1.3 19,918 - +0.5 19,923 + -0.5 19,923 + -1.7 19,923 + -1.2 19,923 + +2.5 19,935 + +0.8 19,935 + +0.5 19,936 - -0.2 20,023 - -0.8 20,185 + ABZR87_RS00095 0.18 -0.9 20,186 - ABZR87_RS00095 0.18 -2.1 20,186 - ABZR87_RS00095 0.18 +0.8 20,186 - ABZR87_RS00095 0.18 +1.3 20,211 + ABZR87_RS00095 0.19 -1.1 20,212 - ABZR87_RS00095 0.19 +0.6 20,212 - ABZR87_RS00095 0.19 -1.5 20,212 - ABZR87_RS00095 0.19 +0.6 20,227 - ABZR87_RS00095 0.20 +1.2 20,277 + ABZR87_RS00095 0.22 +0.1 20,278 - ABZR87_RS00095 0.22 +0.2 20,278 - ABZR87_RS00095 0.22 +0.9 20,278 - ABZR87_RS00095 0.22 -0.5 20,322 + ABZR87_RS00095 0.25 +0.5 20,322 + ABZR87_RS00095 0.25 -1.7 20,323 - ABZR87_RS00095 0.25 +0.1 20,370 + ABZR87_RS00095 0.27 -0.1 20,371 - ABZR87_RS00095 0.27 -0.6 20,371 - ABZR87_RS00095 0.27 +0.8 20,371 - ABZR87_RS00095 0.27 +1.0 20,439 + ABZR87_RS00095 0.31 -0.0 20,439 + ABZR87_RS00095 0.31 +0.6 20,439 + ABZR87_RS00095 0.31 +1.4 20,440 - ABZR87_RS00095 0.31 +0.2 20,440 - ABZR87_RS00095 0.31 -1.1 20,440 - ABZR87_RS00095 0.31 -0.5 20,440 - ABZR87_RS00095 0.31 -0.6 20,440 - ABZR87_RS00095 0.31 -0.6 20,440 - ABZR87_RS00095 0.31 +0.8 20,440 - ABZR87_RS00095 0.31 -0.4 20,440 - ABZR87_RS00095 0.31 -0.1 20,530 - ABZR87_RS00095 0.36 -0.9 20,532 + ABZR87_RS00095 0.36 +1.5 20,532 + ABZR87_RS00095 0.36 +0.1 20,533 - ABZR87_RS00095 0.36 -2.1 20,533 - ABZR87_RS00095 0.36 +0.4 20,533 - ABZR87_RS00095 0.36 +1.6 20,533 - ABZR87_RS00095 0.36 +0.7 20,533 - ABZR87_RS00095 0.36 -0.6 20,533 - ABZR87_RS00095 0.36 -2.1 20,614 - ABZR87_RS00095 0.40 -0.4 20,622 + ABZR87_RS00095 0.41 -0.4 20,623 - ABZR87_RS00095 0.41 -1.0 20,644 + ABZR87_RS00095 0.42 -0.1 20,644 + ABZR87_RS00095 0.42 -0.7 20,655 + ABZR87_RS00095 0.42 -0.3 20,655 + ABZR87_RS00095 0.42 -0.8 20,655 + ABZR87_RS00095 0.42 -1.0 20,656 - ABZR87_RS00095 0.42 +0.1 20,656 - ABZR87_RS00095 0.42 -0.9 20,656 - ABZR87_RS00095 0.42 -1.1 20,656 - ABZR87_RS00095 0.42 -0.8 20,656 - ABZR87_RS00095 0.42 +0.9 20,656 - ABZR87_RS00095 0.42 -0.1 20,656 - ABZR87_RS00095 0.42 -0.9 20,874 + ABZR87_RS00095 0.54 -0.5 20,875 - ABZR87_RS00095 0.54 +3.1 20,943 + ABZR87_RS00095 0.58 -0.4 20,943 + ABZR87_RS00095 0.58 +0.3 20,943 + ABZR87_RS00095 0.58 +0.2 20,944 - ABZR87_RS00095 0.58 -0.1 20,971 - ABZR87_RS00095 0.59 +0.1 21,136 + ABZR87_RS00095 0.68 -1.0 21,136 + ABZR87_RS00095 0.68 +1.5 21,136 + ABZR87_RS00095 0.68 +0.3 21,137 - ABZR87_RS00095 0.68 +0.4 21,187 + ABZR87_RS00095 0.71 -0.5 21,188 - ABZR87_RS00095 0.71 -1.0 21,201 + ABZR87_RS00095 0.71 -0.1 21,202 - ABZR87_RS00095 0.71 +1.0 21,655 + +2.2 21,655 + -0.4 21,655 + +0.8 21,656 - +0.8 21,656 - -0.4 21,656 - -0.4 21,760 + +1.1 21,760 + -0.8 21,947 + +1.7 21,947 + +1.0 21,948 - +1.8 22,013 - +0.7 22,013 - -0.9 22,117 + +0.4 22,207 - +0.4 22,570 - ABZR87_RS00100 0.89 +0.9 22,570 - ABZR87_RS00100 0.89 +1.2 22,603 + -0.3 22,603 + -0.8 22,603 + -0.2 22,603 + +0.6 22,603 + +1.2 22,603 + -0.8 22,603 + +0.8 22,604 - +0.0 22,604 - -0.3 22,604 - +0.2 22,604 - +0.4 22,604 - +0.7 22,604 - +1.2 22,604 - +0.6 22,604 - +0.4 22,604 - +0.8 22,604 - +0.7 22,650 + ABZR87_RS00105 0.13 +0.9 22,650 + ABZR87_RS00105 0.13 +0.4 22,650 + ABZR87_RS00105 0.13 +1.2 22,650 + ABZR87_RS00105 0.13 +0.7 22,650 + ABZR87_RS00105 0.13 +1.5 22,651 - ABZR87_RS00105 0.14 +1.2 22,651 - ABZR87_RS00105 0.14 +0.6 22,651 - ABZR87_RS00105 0.14 +1.1 22,651 - ABZR87_RS00105 0.14 -0.8
Or see this region's nucleotide sequence