Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20345 and ABZR86_RS20350 overlap by 4 nucleotides ABZR86_RS20350 and ABZR86_RS20355 are separated by 13 nucleotides ABZR86_RS20355 and ABZR86_RS20360 are separated by 121 nucleotides
ABZR86_RS20345: ABZR86_RS20345 - paraquat-inducible protein A, at 7,390 to 8,025
_RS20345
ABZR86_RS20350: ABZR86_RS20350 - paraquat-inducible protein A, at 8,022 to 8,621
_RS20350
ABZR86_RS20355: ABZR86_RS20355 - DUF3313 domain-containing protein, at 8,635 to 9,300
_RS20355
ABZR86_RS20360: ABZR86_RS20360 - ATP-binding protein, at 9,422 to 10,579
_RS20360
Position (kb) 8
9
10 Strain fitness (log2 ratio) -2
-1
0
1 at 7.677 kb on - strand, within ABZR86_RS20345 at 7.838 kb on + strand, within ABZR86_RS20345 at 7.839 kb on - strand, within ABZR86_RS20345 at 7.839 kb on - strand, within ABZR86_RS20345 at 7.839 kb on - strand, within ABZR86_RS20345 at 7.839 kb on - strand, within ABZR86_RS20345 at 7.839 kb on - strand, within ABZR86_RS20345 at 7.839 kb on - strand, within ABZR86_RS20345 at 8.268 kb on + strand, within ABZR86_RS20350 at 8.268 kb on + strand, within ABZR86_RS20350 at 8.269 kb on - strand, within ABZR86_RS20350 at 8.468 kb on + strand, within ABZR86_RS20350 at 8.468 kb on + strand, within ABZR86_RS20350 at 8.736 kb on - strand, within ABZR86_RS20355 at 8.750 kb on + strand, within ABZR86_RS20355 at 8.751 kb on - strand, within ABZR86_RS20355 at 8.784 kb on - strand, within ABZR86_RS20355 at 8.784 kb on - strand, within ABZR86_RS20355 at 8.855 kb on + strand, within ABZR86_RS20355 at 8.856 kb on - strand, within ABZR86_RS20355 at 9.078 kb on - strand, within ABZR86_RS20355 at 9.078 kb on - strand, within ABZR86_RS20355 at 9.138 kb on - strand, within ABZR86_RS20355 at 9.185 kb on + strand, within ABZR86_RS20355 at 9.186 kb on - strand, within ABZR86_RS20355 at 9.210 kb on - strand, within ABZR86_RS20355 at 9.294 kb on + strand at 9.349 kb on + strand at 9.375 kb on - strand at 9.574 kb on - strand, within ABZR86_RS20360 at 9.743 kb on + strand, within ABZR86_RS20360 at 9.744 kb on - strand, within ABZR86_RS20360
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 7,677 - ABZR86_RS20345 0.45 +0.2 7,838 + ABZR86_RS20345 0.70 +0.0 7,839 - ABZR86_RS20345 0.71 -0.8 7,839 - ABZR86_RS20345 0.71 -1.7 7,839 - ABZR86_RS20345 0.71 +0.8 7,839 - ABZR86_RS20345 0.71 -0.3 7,839 - ABZR86_RS20345 0.71 -0.9 7,839 - ABZR86_RS20345 0.71 +1.1 8,268 + ABZR86_RS20350 0.41 +0.4 8,268 + ABZR86_RS20350 0.41 +0.0 8,269 - ABZR86_RS20350 0.41 -0.6 8,468 + ABZR86_RS20350 0.74 +0.6 8,468 + ABZR86_RS20350 0.74 -0.4 8,736 - ABZR86_RS20355 0.15 +0.7 8,750 + ABZR86_RS20355 0.17 -0.7 8,751 - ABZR86_RS20355 0.17 -1.8 8,784 - ABZR86_RS20355 0.22 -0.1 8,784 - ABZR86_RS20355 0.22 -0.3 8,855 + ABZR86_RS20355 0.33 -0.1 8,856 - ABZR86_RS20355 0.33 -1.1 9,078 - ABZR86_RS20355 0.67 -0.9 9,078 - ABZR86_RS20355 0.67 +0.2 9,138 - ABZR86_RS20355 0.76 -0.6 9,185 + ABZR86_RS20355 0.83 -0.0 9,186 - ABZR86_RS20355 0.83 -0.5 9,210 - ABZR86_RS20355 0.86 +0.5 9,294 + -0.3 9,349 + +0.6 9,375 - +0.2 9,574 - ABZR86_RS20360 0.13 +0.8 9,743 + ABZR86_RS20360 0.28 -0.6 9,744 - ABZR86_RS20360 0.28 -0.8
Or see this region's nucleotide sequence