Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20195 and ABZR86_RS20200 are separated by 9 nucleotides ABZR86_RS20200 and ABZR86_RS20205 overlap by 4 nucleotides ABZR86_RS20205 and ABZR86_RS20210 are separated by 293 nucleotides ABZR86_RS20210 and ABZR86_RS20215 are separated by 7 nucleotides
ABZR86_RS20195: ABZR86_RS20195 - flagellar hook-length control protein FliK, at 533,267 to 534,307
_RS20195
ABZR86_RS20200: ABZR86_RS20200 - type II toxin-antitoxin system HicB family antitoxin, at 534,317 to 534,658
_RS20200
ABZR86_RS20205: ABZR86_RS20205 - type II toxin-antitoxin system HicA family toxin, at 534,655 to 534,849
_RS20205
ABZR86_RS20210: ABZR86_RS20210 - flagellar basal body-associated protein FliL, at 535,143 to 535,658
_RS20210
ABZR86_RS20215: ABZR86_RS20215 - flagellar motor switch protein FliM, at 535,666 to 536,682
_RS20215
Position (kb) 535
536 Strain fitness (log2 ratio) -1
0
1 at 534.261 kb on + strand at 534.295 kb on + strand at 534.296 kb on - strand at 534.459 kb on + strand, within ABZR86_RS20200 at 534.549 kb on + strand, within ABZR86_RS20200 at 535.074 kb on + strand at 535.237 kb on + strand, within ABZR86_RS20210 at 535.269 kb on + strand, within ABZR86_RS20210 at 535.270 kb on - strand, within ABZR86_RS20210 at 535.270 kb on - strand, within ABZR86_RS20210 at 535.270 kb on - strand, within ABZR86_RS20210 at 535.407 kb on + strand, within ABZR86_RS20210 at 535.408 kb on - strand, within ABZR86_RS20210 at 535.408 kb on - strand, within ABZR86_RS20210 at 535.408 kb on - strand, within ABZR86_RS20210 at 535.408 kb on - strand, within ABZR86_RS20210 at 535.521 kb on + strand, within ABZR86_RS20210 at 535.521 kb on + strand, within ABZR86_RS20210 at 535.522 kb on - strand, within ABZR86_RS20210 at 535.632 kb on + strand at 535.633 kb on - strand at 535.855 kb on + strand, within ABZR86_RS20215 at 536.285 kb on + strand, within ABZR86_RS20215 at 536.323 kb on + strand, within ABZR86_RS20215 at 536.323 kb on + strand, within ABZR86_RS20215
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 534,261 + -0.2 534,295 + -0.1 534,296 - +0.7 534,459 + ABZR86_RS20200 0.42 -0.0 534,549 + ABZR86_RS20200 0.68 +0.5 535,074 + -1.3 535,237 + ABZR86_RS20210 0.18 +0.0 535,269 + ABZR86_RS20210 0.24 -1.2 535,270 - ABZR86_RS20210 0.25 +0.0 535,270 - ABZR86_RS20210 0.25 -0.3 535,270 - ABZR86_RS20210 0.25 -0.3 535,407 + ABZR86_RS20210 0.51 +0.9 535,408 - ABZR86_RS20210 0.51 -0.7 535,408 - ABZR86_RS20210 0.51 +0.9 535,408 - ABZR86_RS20210 0.51 -0.8 535,408 - ABZR86_RS20210 0.51 -0.1 535,521 + ABZR86_RS20210 0.73 +0.0 535,521 + ABZR86_RS20210 0.73 -0.3 535,522 - ABZR86_RS20210 0.73 +0.6 535,632 + -0.7 535,633 - +0.2 535,855 + ABZR86_RS20215 0.19 -1.2 536,285 + ABZR86_RS20215 0.61 -1.3 536,323 + ABZR86_RS20215 0.65 -1.0 536,323 + ABZR86_RS20215 0.65 +0.3
Or see this region's nucleotide sequence