Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides ABZR86_RS13685 and ABZR86_RS13690 overlap by 4 nucleotides ABZR86_RS13690 and ABZR86_RS13695 overlap by 4 nucleotides ABZR86_RS13695 and ABZR86_RS13700 overlap by 4 nucleotides
ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220
_RS13680
ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716
_RS13685
ABZR86_RS13690: ABZR86_RS13690 - FliI/YscN family ATPase, at 3,058,713 to 3,060,062
_RS13690
ABZR86_RS13695: ABZR86_RS13695 - FliH/SctL family protein, at 3,060,059 to 3,060,685
_RS13695
ABZR86_RS13700: ABZR86_RS13700 - hypothetical protein, at 3,060,682 to 3,061,365
_RS13700
Position (kb)
3058
3059
3060
3061 Strain fitness (log2 ratio)
-2
-1
0
1 at 3057.927 kb on - strand, within ABZR86_RS13680 at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.170 kb on - strand at 3058.170 kb on - strand at 3058.221 kb on - strand at 3058.221 kb on - strand at 3058.885 kb on + strand, within ABZR86_RS13690 at 3058.897 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.023 kb on + strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.024 kb on - strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.027 kb on + strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.028 kb on - strand, within ABZR86_RS13690 at 3059.101 kb on + strand, within ABZR86_RS13690 at 3059.102 kb on - strand, within ABZR86_RS13690 at 3059.102 kb on - strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.296 kb on + strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.297 kb on - strand, within ABZR86_RS13690 at 3059.644 kb on + strand, within ABZR86_RS13690 at 3059.644 kb on + strand, within ABZR86_RS13690 at 3059.645 kb on - strand, within ABZR86_RS13690 at 3059.645 kb on - strand, within ABZR86_RS13690 at 3059.942 kb on - strand at 3060.868 kb on + strand, within ABZR86_RS13700 at 3060.868 kb on + strand, within ABZR86_RS13700 at 3060.868 kb on + strand, within ABZR86_RS13700 at 3060.868 kb on + strand, within ABZR86_RS13700 at 3060.869 kb on - strand, within ABZR86_RS13700 at 3060.893 kb on + strand, within ABZR86_RS13700
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 3,057,927 - ABZR86_RS13680 0.59 -0.4 3,058,163 + +0.1 3,058,163 + +0.2 3,058,163 + -0.5 3,058,169 + -0.3 3,058,169 + -0.2 3,058,169 + +1.2 3,058,170 - +0.6 3,058,170 - -0.1 3,058,221 - +0.1 3,058,221 - +0.7 3,058,885 + ABZR86_RS13690 0.13 -0.4 3,058,897 + ABZR86_RS13690 0.14 -0.2 3,059,023 + ABZR86_RS13690 0.23 +0.5 3,059,023 + ABZR86_RS13690 0.23 +0.2 3,059,023 + ABZR86_RS13690 0.23 +0.7 3,059,023 + ABZR86_RS13690 0.23 +0.3 3,059,023 + ABZR86_RS13690 0.23 +0.7 3,059,023 + ABZR86_RS13690 0.23 -1.8 3,059,023 + ABZR86_RS13690 0.23 -0.1 3,059,024 - ABZR86_RS13690 0.23 -0.3 3,059,024 - ABZR86_RS13690 0.23 -1.9 3,059,024 - ABZR86_RS13690 0.23 +0.2 3,059,024 - ABZR86_RS13690 0.23 +0.4 3,059,024 - ABZR86_RS13690 0.23 +0.6 3,059,024 - ABZR86_RS13690 0.23 +0.3 3,059,024 - ABZR86_RS13690 0.23 -2.0 3,059,024 - ABZR86_RS13690 0.23 +0.2 3,059,024 - ABZR86_RS13690 0.23 -0.9 3,059,027 + ABZR86_RS13690 0.23 -0.9 3,059,027 + ABZR86_RS13690 0.23 +0.9 3,059,027 + ABZR86_RS13690 0.23 +0.5 3,059,027 + ABZR86_RS13690 0.23 +0.3 3,059,028 - ABZR86_RS13690 0.23 +0.9 3,059,028 - ABZR86_RS13690 0.23 -0.3 3,059,028 - ABZR86_RS13690 0.23 -0.9 3,059,028 - ABZR86_RS13690 0.23 -0.5 3,059,101 + ABZR86_RS13690 0.29 +0.1 3,059,102 - ABZR86_RS13690 0.29 -0.1 3,059,102 - ABZR86_RS13690 0.29 -1.1 3,059,296 + ABZR86_RS13690 0.43 -0.9 3,059,296 + ABZR86_RS13690 0.43 -0.5 3,059,296 + ABZR86_RS13690 0.43 +0.9 3,059,296 + ABZR86_RS13690 0.43 +0.7 3,059,297 - ABZR86_RS13690 0.43 +0.3 3,059,297 - ABZR86_RS13690 0.43 +0.8 3,059,297 - ABZR86_RS13690 0.43 +1.0 3,059,297 - ABZR86_RS13690 0.43 -2.4 3,059,644 + ABZR86_RS13690 0.69 -0.2 3,059,644 + ABZR86_RS13690 0.69 -0.1 3,059,645 - ABZR86_RS13690 0.69 +0.9 3,059,645 - ABZR86_RS13690 0.69 +0.5 3,059,942 - +0.0 3,060,868 + ABZR86_RS13700 0.27 -0.3 3,060,868 + ABZR86_RS13700 0.27 -0.4 3,060,868 + ABZR86_RS13700 0.27 -0.0 3,060,868 + ABZR86_RS13700 0.27 -0.5 3,060,869 - ABZR86_RS13700 0.27 +0.7 3,060,893 + ABZR86_RS13700 0.31 -0.8
Or see this region's nucleotide sequence