Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01785 and ABZR86_RS01790 are separated by 111 nucleotides ABZR86_RS01790 and ABZR86_RS01795 are separated by 2 nucleotides ABZR86_RS01795 and ABZR86_RS01800 are separated by 0 nucleotides ABZR86_RS01800 and ABZR86_RS01805 overlap by 1 nucleotides
ABZR86_RS01785: ABZR86_RS01785 - cysteine hydrolase family protein, at 386,772 to 387,416
_RS01785
ABZR86_RS01790: ABZR86_RS01790 - leucyl/phenylalanyl-tRNA--protein transferase, at 387,528 to 388,262
_RS01790
ABZR86_RS01795: ABZR86_RS01795 - GNAT family N-acetyltransferase, at 388,265 to 389,449
_RS01795
ABZR86_RS01800: ABZR86_RS01800 - DsbA family protein, at 389,450 to 390,109
_RS01800
ABZR86_RS01805: ABZR86_RS01805 - thioredoxin-disulfide reductase, at 390,109 to 391,068
_RS01805
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 387.375 kb on + strand at 387.376 kb on - strand at 387.420 kb on + strand at 387.420 kb on + strand at 387.421 kb on - strand at 387.421 kb on - strand at 387.421 kb on - strand at 387.521 kb on + strand at 387.521 kb on + strand at 387.647 kb on - strand, within ABZR86_RS01790 at 387.706 kb on + strand, within ABZR86_RS01790 at 387.817 kb on + strand, within ABZR86_RS01790 at 387.818 kb on - strand, within ABZR86_RS01790 at 387.818 kb on - strand, within ABZR86_RS01790 at 387.818 kb on - strand, within ABZR86_RS01790 at 387.890 kb on + strand, within ABZR86_RS01790 at 387.890 kb on + strand, within ABZR86_RS01790 at 387.891 kb on - strand, within ABZR86_RS01790 at 387.891 kb on - strand, within ABZR86_RS01790 at 387.892 kb on + strand, within ABZR86_RS01790 at 387.892 kb on + strand, within ABZR86_RS01790 at 387.892 kb on + strand, within ABZR86_RS01790 at 387.892 kb on + strand, within ABZR86_RS01790 at 387.892 kb on + strand, within ABZR86_RS01790 at 387.892 kb on + strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 387.893 kb on - strand, within ABZR86_RS01790 at 388.059 kb on + strand, within ABZR86_RS01790 at 388.059 kb on + strand, within ABZR86_RS01790 at 388.059 kb on + strand, within ABZR86_RS01790 at 388.060 kb on - strand, within ABZR86_RS01790 at 388.060 kb on - strand, within ABZR86_RS01790 at 388.060 kb on - strand, within ABZR86_RS01790 at 388.108 kb on + strand, within ABZR86_RS01790 at 388.108 kb on + strand, within ABZR86_RS01790 at 388.109 kb on - strand, within ABZR86_RS01790 at 388.132 kb on + strand, within ABZR86_RS01790 at 388.132 kb on + strand, within ABZR86_RS01790 at 388.315 kb on - strand at 388.387 kb on - strand, within ABZR86_RS01795 at 388.387 kb on - strand, within ABZR86_RS01795 at 388.483 kb on + strand, within ABZR86_RS01795 at 388.483 kb on + strand, within ABZR86_RS01795 at 388.483 kb on + strand, within ABZR86_RS01795 at 388.483 kb on + strand, within ABZR86_RS01795 at 388.484 kb on - strand, within ABZR86_RS01795 at 388.484 kb on - strand, within ABZR86_RS01795 at 388.484 kb on - strand, within ABZR86_RS01795 at 388.500 kb on + strand, within ABZR86_RS01795 at 388.501 kb on - strand, within ABZR86_RS01795 at 388.503 kb on + strand, within ABZR86_RS01795 at 388.504 kb on - strand, within ABZR86_RS01795 at 388.504 kb on - strand, within ABZR86_RS01795 at 388.560 kb on + strand, within ABZR86_RS01795 at 388.561 kb on - strand, within ABZR86_RS01795 at 388.722 kb on + strand, within ABZR86_RS01795 at 388.722 kb on + strand, within ABZR86_RS01795 at 388.722 kb on + strand, within ABZR86_RS01795 at 388.722 kb on + strand, within ABZR86_RS01795 at 388.723 kb on - strand, within ABZR86_RS01795 at 388.723 kb on - strand, within ABZR86_RS01795 at 388.723 kb on - strand, within ABZR86_RS01795 at 388.878 kb on + strand, within ABZR86_RS01795 at 389.092 kb on - strand, within ABZR86_RS01795 at 389.118 kb on + strand, within ABZR86_RS01795 at 389.118 kb on + strand, within ABZR86_RS01795 at 389.119 kb on - strand, within ABZR86_RS01795 at 389.119 kb on - strand, within ABZR86_RS01795 at 389.121 kb on + strand, within ABZR86_RS01795 at 389.121 kb on + strand, within ABZR86_RS01795 at 389.121 kb on + strand, within ABZR86_RS01795 at 389.121 kb on + strand, within ABZR86_RS01795 at 389.122 kb on - strand, within ABZR86_RS01795 at 389.122 kb on - strand, within ABZR86_RS01795 at 389.122 kb on - strand, within ABZR86_RS01795 at 389.200 kb on - strand, within ABZR86_RS01795 at 389.235 kb on + strand, within ABZR86_RS01795 at 389.739 kb on + strand, within ABZR86_RS01800 at 389.739 kb on + strand, within ABZR86_RS01800 at 389.772 kb on + strand, within ABZR86_RS01800 at 389.832 kb on + strand, within ABZR86_RS01800 at 389.833 kb on - strand, within ABZR86_RS01800 at 389.871 kb on + strand, within ABZR86_RS01800 at 389.871 kb on + strand, within ABZR86_RS01800 at 389.871 kb on + strand, within ABZR86_RS01800 at 389.872 kb on - strand, within ABZR86_RS01800 at 389.872 kb on - strand, within ABZR86_RS01800 at 390.051 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.081 kb on + strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand at 390.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 387,375 + -0.5 387,376 - +0.7 387,420 + -0.1 387,420 + -1.5 387,421 - +0.6 387,421 - -0.5 387,421 - -0.9 387,521 + +0.2 387,521 + -1.1 387,647 - ABZR86_RS01790 0.16 -0.4 387,706 + ABZR86_RS01790 0.24 -0.5 387,817 + ABZR86_RS01790 0.39 +0.9 387,818 - ABZR86_RS01790 0.39 -0.5 387,818 - ABZR86_RS01790 0.39 +0.7 387,818 - ABZR86_RS01790 0.39 +0.6 387,890 + ABZR86_RS01790 0.49 -0.0 387,890 + ABZR86_RS01790 0.49 +0.6 387,891 - ABZR86_RS01790 0.49 -0.5 387,891 - ABZR86_RS01790 0.49 +0.4 387,892 + ABZR86_RS01790 0.50 -0.1 387,892 + ABZR86_RS01790 0.50 +0.1 387,892 + ABZR86_RS01790 0.50 +1.3 387,892 + ABZR86_RS01790 0.50 +0.6 387,892 + ABZR86_RS01790 0.50 -0.8 387,892 + ABZR86_RS01790 0.50 -0.0 387,893 - ABZR86_RS01790 0.50 -0.6 387,893 - ABZR86_RS01790 0.50 +0.6 387,893 - ABZR86_RS01790 0.50 -0.5 387,893 - ABZR86_RS01790 0.50 +0.1 387,893 - ABZR86_RS01790 0.50 -2.2 387,893 - ABZR86_RS01790 0.50 +1.2 387,893 - ABZR86_RS01790 0.50 +1.0 387,893 - ABZR86_RS01790 0.50 -0.3 388,059 + ABZR86_RS01790 0.72 -0.0 388,059 + ABZR86_RS01790 0.72 -0.1 388,059 + ABZR86_RS01790 0.72 -0.6 388,060 - ABZR86_RS01790 0.72 -1.0 388,060 - ABZR86_RS01790 0.72 -0.4 388,060 - ABZR86_RS01790 0.72 +1.1 388,108 + ABZR86_RS01790 0.79 +0.6 388,108 + ABZR86_RS01790 0.79 -0.2 388,109 - ABZR86_RS01790 0.79 -0.1 388,132 + ABZR86_RS01790 0.82 -0.0 388,132 + ABZR86_RS01790 0.82 -0.7 388,315 - +1.1 388,387 - ABZR86_RS01795 0.10 +0.5 388,387 - ABZR86_RS01795 0.10 +0.2 388,483 + ABZR86_RS01795 0.18 -0.6 388,483 + ABZR86_RS01795 0.18 -0.1 388,483 + ABZR86_RS01795 0.18 -0.3 388,483 + ABZR86_RS01795 0.18 +0.1 388,484 - ABZR86_RS01795 0.18 +0.7 388,484 - ABZR86_RS01795 0.18 +0.3 388,484 - ABZR86_RS01795 0.18 -0.2 388,500 + ABZR86_RS01795 0.20 +0.2 388,501 - ABZR86_RS01795 0.20 -3.0 388,503 + ABZR86_RS01795 0.20 +0.4 388,504 - ABZR86_RS01795 0.20 -0.5 388,504 - ABZR86_RS01795 0.20 +0.3 388,560 + ABZR86_RS01795 0.25 +0.8 388,561 - ABZR86_RS01795 0.25 +0.8 388,722 + ABZR86_RS01795 0.39 +0.7 388,722 + ABZR86_RS01795 0.39 +0.4 388,722 + ABZR86_RS01795 0.39 +0.2 388,722 + ABZR86_RS01795 0.39 +0.2 388,723 - ABZR86_RS01795 0.39 +0.8 388,723 - ABZR86_RS01795 0.39 +0.1 388,723 - ABZR86_RS01795 0.39 +0.4 388,878 + ABZR86_RS01795 0.52 +0.4 389,092 - ABZR86_RS01795 0.70 +1.2 389,118 + ABZR86_RS01795 0.72 -0.2 389,118 + ABZR86_RS01795 0.72 +0.1 389,119 - ABZR86_RS01795 0.72 +0.4 389,119 - ABZR86_RS01795 0.72 +0.9 389,121 + ABZR86_RS01795 0.72 +0.4 389,121 + ABZR86_RS01795 0.72 -0.9 389,121 + ABZR86_RS01795 0.72 -0.9 389,121 + ABZR86_RS01795 0.72 +0.2 389,122 - ABZR86_RS01795 0.72 -0.7 389,122 - ABZR86_RS01795 0.72 -0.3 389,122 - ABZR86_RS01795 0.72 +0.8 389,200 - ABZR86_RS01795 0.79 -0.0 389,235 + ABZR86_RS01795 0.82 +0.1 389,739 + ABZR86_RS01800 0.44 -0.1 389,739 + ABZR86_RS01800 0.44 +0.2 389,772 + ABZR86_RS01800 0.49 -0.3 389,832 + ABZR86_RS01800 0.58 -0.6 389,833 - ABZR86_RS01800 0.58 -0.1 389,871 + ABZR86_RS01800 0.64 +0.6 389,871 + ABZR86_RS01800 0.64 +1.6 389,871 + ABZR86_RS01800 0.64 -0.2 389,872 - ABZR86_RS01800 0.64 +0.4 389,872 - ABZR86_RS01800 0.64 +0.7 390,051 + -0.7 390,081 + -0.1 390,081 + +0.4 390,081 + -0.8 390,081 + +0.3 390,081 + +0.9 390,081 + +0.7 390,081 + +0.5 390,081 + -4.4 390,081 + -0.1 390,082 - +0.6 390,082 - -0.2 390,082 - -0.3 390,082 - -0.2 390,082 - +0.2 390,082 - +1.0 390,082 - +0.1 390,082 - -0.0 390,082 - -0.0 390,082 - +0.4 390,082 - -0.4 390,082 - -0.4 390,082 - +0.6 390,082 - +0.6 390,082 - +0.6
Or see this region's nucleotide sequence