Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01770 and ABZR86_RS01775 are separated by 85 nucleotides ABZR86_RS01775 and ABZR86_RS01780 are separated by 107 nucleotides ABZR86_RS01780 and ABZR86_RS01785 are separated by 112 nucleotides ABZR86_RS01785 and ABZR86_RS01790 are separated by 111 nucleotides
ABZR86_RS01770: ABZR86_RS01770 - methyltransferase domain-containing protein, at 384,002 to 384,697
_RS01770
ABZR86_RS01775: ABZR86_RS01775 - HD-GYP domain-containing protein, at 384,783 to 385,589
_RS01775
ABZR86_RS01780: ABZR86_RS01780 - helix-turn-helix domain-containing protein, at 385,697 to 386,659
_RS01780
ABZR86_RS01785: ABZR86_RS01785 - cysteine hydrolase family protein, at 386,772 to 387,416
_RS01785
ABZR86_RS01790: ABZR86_RS01790 - leucyl/phenylalanyl-tRNA--protein transferase, at 387,528 to 388,262
_RS01790
Position (kb) 385
386
387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.802 kb on + strand at 384.802 kb on + strand at 384.802 kb on + strand at 384.802 kb on + strand at 384.803 kb on - strand at 384.803 kb on - strand at 384.819 kb on + strand at 384.819 kb on + strand at 384.819 kb on + strand at 384.819 kb on + strand at 384.820 kb on - strand at 384.820 kb on - strand at 384.954 kb on + strand, within ABZR86_RS01775 at 384.954 kb on + strand, within ABZR86_RS01775 at 385.279 kb on - strand, within ABZR86_RS01775 at 385.455 kb on + strand, within ABZR86_RS01775 at 385.456 kb on - strand, within ABZR86_RS01775 at 385.456 kb on - strand, within ABZR86_RS01775 at 385.456 kb on - strand, within ABZR86_RS01775 at 385.554 kb on + strand at 385.555 kb on - strand at 385.555 kb on - strand at 385.555 kb on - strand at 385.596 kb on + strand at 385.596 kb on + strand at 385.596 kb on + strand at 385.596 kb on + strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.639 kb on - strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.684 kb on - strand at 385.699 kb on - strand at 386.093 kb on + strand, within ABZR86_RS01780 at 386.094 kb on - strand, within ABZR86_RS01780 at 386.217 kb on + strand, within ABZR86_RS01780 at 386.217 kb on + strand, within ABZR86_RS01780 at 386.217 kb on + strand, within ABZR86_RS01780 at 386.217 kb on + strand, within ABZR86_RS01780 at 386.217 kb on + strand, within ABZR86_RS01780 at 386.218 kb on - strand, within ABZR86_RS01780 at 386.218 kb on - strand, within ABZR86_RS01780 at 386.218 kb on - strand, within ABZR86_RS01780 at 386.479 kb on - strand, within ABZR86_RS01780 at 386.826 kb on + strand at 386.826 kb on + strand at 386.827 kb on - strand at 387.123 kb on + strand, within ABZR86_RS01785 at 387.123 kb on + strand, within ABZR86_RS01785 at 387.123 kb on + strand, within ABZR86_RS01785 at 387.124 kb on - strand, within ABZR86_RS01785 at 387.219 kb on + strand, within ABZR86_RS01785 at 387.375 kb on + strand at 387.376 kb on - strand at 387.420 kb on + strand at 387.420 kb on + strand at 387.421 kb on - strand at 387.421 kb on - strand at 387.421 kb on - strand at 387.521 kb on + strand at 387.521 kb on + strand at 387.647 kb on - strand, within ABZR86_RS01790
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 384,802 + -1.4 384,802 + -1.1 384,802 + +1.6 384,802 + -1.1 384,803 - +0.5 384,803 - +0.1 384,819 + -0.0 384,819 + -0.2 384,819 + -2.4 384,819 + +1.0 384,820 - -0.2 384,820 - +0.3 384,954 + ABZR86_RS01775 0.21 +2.7 384,954 + ABZR86_RS01775 0.21 +0.9 385,279 - ABZR86_RS01775 0.61 -0.6 385,455 + ABZR86_RS01775 0.83 -0.6 385,456 - ABZR86_RS01775 0.83 -0.2 385,456 - ABZR86_RS01775 0.83 +0.5 385,456 - ABZR86_RS01775 0.83 +0.6 385,554 + -1.2 385,555 - -0.4 385,555 - +0.8 385,555 - +0.0 385,596 + +1.1 385,596 + -1.5 385,596 + +0.5 385,596 + +0.3 385,597 - +0.2 385,597 - +0.2 385,597 - +0.3 385,597 - +0.5 385,597 - -0.8 385,639 - +0.2 385,683 + -2.0 385,683 + -0.6 385,683 + -0.4 385,683 + -1.2 385,683 + +1.0 385,683 + -0.5 385,684 - -0.6 385,699 - +2.6 386,093 + ABZR86_RS01780 0.41 -2.3 386,094 - ABZR86_RS01780 0.41 +0.4 386,217 + ABZR86_RS01780 0.54 +0.6 386,217 + ABZR86_RS01780 0.54 -0.6 386,217 + ABZR86_RS01780 0.54 -1.7 386,217 + ABZR86_RS01780 0.54 -0.6 386,217 + ABZR86_RS01780 0.54 -0.0 386,218 - ABZR86_RS01780 0.54 -0.0 386,218 - ABZR86_RS01780 0.54 -0.7 386,218 - ABZR86_RS01780 0.54 +0.1 386,479 - ABZR86_RS01780 0.81 -0.8 386,826 + -1.4 386,826 + +0.1 386,827 - -0.2 387,123 + ABZR86_RS01785 0.54 -0.8 387,123 + ABZR86_RS01785 0.54 -0.4 387,123 + ABZR86_RS01785 0.54 +0.8 387,124 - ABZR86_RS01785 0.55 +0.5 387,219 + ABZR86_RS01785 0.69 +0.4 387,375 + -0.5 387,376 - +0.7 387,420 + -0.1 387,420 + -1.5 387,421 - +0.6 387,421 - -0.5 387,421 - -0.9 387,521 + +0.2 387,521 + -1.1 387,647 - ABZR86_RS01790 0.16 -0.4
Or see this region's nucleotide sequence