Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00540 and ABZR86_RS00545 are separated by 55 nucleotides ABZR86_RS00545 and ABZR86_RS00550 are separated by 13 nucleotides ABZR86_RS00550 and ABZR86_RS00555 are separated by 81 nucleotides
ABZR86_RS00540: ABZR86_RS00540 - alpha/beta fold hydrolase, at 102,799 to 103,680
_RS00540
ABZR86_RS00545: ABZR86_RS00545 - NADH:flavin oxidoreductase/NADH oxidase, at 103,736 to 104,788
_RS00545
ABZR86_RS00550: ABZR86_RS00550 - pirin family protein, at 104,802 to 105,677
_RS00550
ABZR86_RS00555: ABZR86_RS00555 - DUF962 domain-containing protein, at 105,759 to 106,061
_RS00555
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1
2 at 102.766 kb on - strand at 102.766 kb on - strand at 102.820 kb on - strand at 102.820 kb on - strand at 102.820 kb on - strand at 102.913 kb on + strand, within ABZR86_RS00540 at 102.914 kb on - strand, within ABZR86_RS00540 at 102.949 kb on + strand, within ABZR86_RS00540 at 102.949 kb on + strand, within ABZR86_RS00540 at 103.177 kb on + strand, within ABZR86_RS00540 at 103.177 kb on + strand, within ABZR86_RS00540 at 103.237 kb on + strand, within ABZR86_RS00540 at 103.279 kb on + strand, within ABZR86_RS00540 at 103.279 kb on + strand, within ABZR86_RS00540 at 103.279 kb on + strand, within ABZR86_RS00540 at 103.279 kb on + strand, within ABZR86_RS00540 at 103.280 kb on - strand, within ABZR86_RS00540 at 103.812 kb on - strand at 103.851 kb on + strand, within ABZR86_RS00545 at 103.851 kb on + strand, within ABZR86_RS00545 at 103.852 kb on - strand, within ABZR86_RS00545 at 104.002 kb on + strand, within ABZR86_RS00545 at 104.003 kb on - strand, within ABZR86_RS00545 at 104.149 kb on + strand, within ABZR86_RS00545 at 104.714 kb on + strand at 104.787 kb on - strand at 104.787 kb on - strand at 104.797 kb on - strand at 104.958 kb on - strand, within ABZR86_RS00550 at 105.288 kb on + strand, within ABZR86_RS00550 at 105.383 kb on + strand, within ABZR86_RS00550 at 105.383 kb on + strand, within ABZR86_RS00550 at 105.383 kb on + strand, within ABZR86_RS00550 at 105.384 kb on - strand, within ABZR86_RS00550 at 105.384 kb on - strand, within ABZR86_RS00550 at 105.384 kb on - strand, within ABZR86_RS00550 at 105.624 kb on + strand at 105.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 102,766 - -1.1 102,766 - -0.8 102,820 - +0.3 102,820 - +1.4 102,820 - +0.1 102,913 + ABZR86_RS00540 0.13 -0.3 102,914 - ABZR86_RS00540 0.13 +1.1 102,949 + ABZR86_RS00540 0.17 +1.0 102,949 + ABZR86_RS00540 0.17 -0.3 103,177 + ABZR86_RS00540 0.43 +1.9 103,177 + ABZR86_RS00540 0.43 -0.2 103,237 + ABZR86_RS00540 0.50 +0.1 103,279 + ABZR86_RS00540 0.54 +0.7 103,279 + ABZR86_RS00540 0.54 +0.1 103,279 + ABZR86_RS00540 0.54 +0.1 103,279 + ABZR86_RS00540 0.54 +0.7 103,280 - ABZR86_RS00540 0.55 -0.4 103,812 - +0.3 103,851 + ABZR86_RS00545 0.11 +0.5 103,851 + ABZR86_RS00545 0.11 +0.6 103,852 - ABZR86_RS00545 0.11 +0.3 104,002 + ABZR86_RS00545 0.25 +0.1 104,003 - ABZR86_RS00545 0.25 +0.4 104,149 + ABZR86_RS00545 0.39 +0.1 104,714 + +1.1 104,787 - +0.1 104,787 - -1.1 104,797 - +0.5 104,958 - ABZR86_RS00550 0.18 +0.2 105,288 + ABZR86_RS00550 0.55 -0.2 105,383 + ABZR86_RS00550 0.66 +0.0 105,383 + ABZR86_RS00550 0.66 +0.5 105,383 + ABZR86_RS00550 0.66 -0.1 105,384 - ABZR86_RS00550 0.66 +0.6 105,384 - ABZR86_RS00550 0.66 +0.3 105,384 - ABZR86_RS00550 0.66 -0.1 105,624 + +0.5 105,716 - -0.2
Or see this region's nucleotide sequence