Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00225

Experiment: Chloramphenicol 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00220 and ABZR86_RS00225 are separated by 314 nucleotidesABZR86_RS00225 and ABZR86_RS00230 are separated by 4 nucleotidesABZR86_RS00230 and ABZR86_RS00235 are separated by 204 nucleotides ABZR86_RS00220: ABZR86_RS00220 - DUF3014 domain-containing protein, at 39,014 to 39,889 _RS00220 ABZR86_RS00225: ABZR86_RS00225 - multidrug effflux MFS transporter, at 40,204 to 41,412 _RS00225 ABZR86_RS00230: ABZR86_RS00230 - hypothetical protein, at 41,417 to 41,914 _RS00230 ABZR86_RS00235: ABZR86_RS00235 - 2'-5' RNA ligase family protein, at 42,119 to 42,718 _RS00235 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.489 kb on - strand, within ABZR86_RS00220at 39.536 kb on + strand, within ABZR86_RS00220at 39.537 kb on - strand, within ABZR86_RS00220at 39.545 kb on + strand, within ABZR86_RS00220at 39.546 kb on - strand, within ABZR86_RS00220at 39.548 kb on + strand, within ABZR86_RS00220at 39.549 kb on - strand, within ABZR86_RS00220at 39.569 kb on + strand, within ABZR86_RS00220at 39.570 kb on - strand, within ABZR86_RS00220at 39.682 kb on + strand, within ABZR86_RS00220at 39.682 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.687 kb on - strand, within ABZR86_RS00220at 39.687 kb on - strand, within ABZR86_RS00220at 39.687 kb on - strand, within ABZR86_RS00220at 39.689 kb on + strand, within ABZR86_RS00220at 39.690 kb on - strand, within ABZR86_RS00220at 40.025 kb on + strandat 40.210 kb on - strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.329 kb on + strand, within ABZR86_RS00225at 40.429 kb on + strand, within ABZR86_RS00225at 40.429 kb on + strand, within ABZR86_RS00225at 40.430 kb on - strand, within ABZR86_RS00225at 40.576 kb on - strand, within ABZR86_RS00225at 40.719 kb on - strand, within ABZR86_RS00225at 40.719 kb on - strand, within ABZR86_RS00225at 40.719 kb on - strand, within ABZR86_RS00225at 40.838 kb on - strand, within ABZR86_RS00225at 40.838 kb on - strand, within ABZR86_RS00225at 40.838 kb on - strand, within ABZR86_RS00225at 40.888 kb on + strand, within ABZR86_RS00225at 40.889 kb on - strand, within ABZR86_RS00225at 40.945 kb on + strand, within ABZR86_RS00225at 40.945 kb on + strand, within ABZR86_RS00225at 40.945 kb on + strand, within ABZR86_RS00225at 40.946 kb on - strand, within ABZR86_RS00225at 40.946 kb on - strand, within ABZR86_RS00225at 40.946 kb on - strand, within ABZR86_RS00225at 41.060 kb on - strand, within ABZR86_RS00225at 41.432 kb on - strandat 41.450 kb on + strandat 41.450 kb on + strandat 41.516 kb on + strand, within ABZR86_RS00230at 41.821 kb on + strand, within ABZR86_RS00230at 41.822 kb on - strand, within ABZR86_RS00230at 41.822 kb on - strand, within ABZR86_RS00230at 41.897 kb on + strandat 41.898 kb on - strandat 42.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml
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39,488 + ABZR86_RS00220 0.54 -1.5
39,488 + ABZR86_RS00220 0.54 +1.3
39,488 + ABZR86_RS00220 0.54 +0.0
39,488 + ABZR86_RS00220 0.54 +0.7
39,488 + ABZR86_RS00220 0.54 +0.3
39,489 - ABZR86_RS00220 0.54 +0.4
39,536 + ABZR86_RS00220 0.60 +1.0
39,537 - ABZR86_RS00220 0.60 +0.6
39,545 + ABZR86_RS00220 0.61 -0.3
39,546 - ABZR86_RS00220 0.61 -0.3
39,548 + ABZR86_RS00220 0.61 +0.6
39,549 - ABZR86_RS00220 0.61 +0.0
39,569 + ABZR86_RS00220 0.63 +0.7
39,570 - ABZR86_RS00220 0.63 +0.3
39,682 + ABZR86_RS00220 0.76 -0.1
39,682 + ABZR86_RS00220 0.76 +0.2
39,686 + ABZR86_RS00220 0.77 +1.5
39,686 + ABZR86_RS00220 0.77 -1.4
39,686 + ABZR86_RS00220 0.77 +0.3
39,686 + ABZR86_RS00220 0.77 +0.2
39,686 + ABZR86_RS00220 0.77 -0.2
39,686 + ABZR86_RS00220 0.77 +0.2
39,686 + ABZR86_RS00220 0.77 -1.4
39,686 + ABZR86_RS00220 0.77 +0.7
39,686 + ABZR86_RS00220 0.77 -0.1
39,687 - ABZR86_RS00220 0.77 +0.1
39,687 - ABZR86_RS00220 0.77 +0.4
39,687 - ABZR86_RS00220 0.77 +1.3
39,689 + ABZR86_RS00220 0.77 +0.9
39,690 - ABZR86_RS00220 0.77 -1.4
40,025 + +0.0
40,210 - +0.9
40,279 + -1.0
40,279 + +0.6
40,279 + -0.7
40,279 + -1.4
40,280 - -1.1
40,280 - -0.3
40,280 - +1.9
40,280 - -0.5
40,280 - -0.4
40,280 - +1.6
40,329 + ABZR86_RS00225 0.10 -1.3
40,429 + ABZR86_RS00225 0.19 +0.6
40,429 + ABZR86_RS00225 0.19 -1.4
40,430 - ABZR86_RS00225 0.19 +0.2
40,576 - ABZR86_RS00225 0.31 -0.2
40,719 - ABZR86_RS00225 0.43 -1.6
40,719 - ABZR86_RS00225 0.43 -1.2
40,719 - ABZR86_RS00225 0.43 -0.3
40,838 - ABZR86_RS00225 0.52 -0.5
40,838 - ABZR86_RS00225 0.52 -1.0
40,838 - ABZR86_RS00225 0.52 -1.0
40,888 + ABZR86_RS00225 0.57 -0.4
40,889 - ABZR86_RS00225 0.57 -2.7
40,945 + ABZR86_RS00225 0.61 -0.6
40,945 + ABZR86_RS00225 0.61 -0.4
40,945 + ABZR86_RS00225 0.61 -0.5
40,946 - ABZR86_RS00225 0.61 +0.3
40,946 - ABZR86_RS00225 0.61 +0.0
40,946 - ABZR86_RS00225 0.61 +0.1
41,060 - ABZR86_RS00225 0.71 -0.4
41,432 - +0.5
41,450 + -0.3
41,450 + -0.2
41,516 + ABZR86_RS00230 0.20 +0.1
41,821 + ABZR86_RS00230 0.81 +0.9
41,822 - ABZR86_RS00230 0.81 +0.4
41,822 - ABZR86_RS00230 0.81 +0.5
41,897 + -0.2
41,898 - +0.4
42,002 + +0.7

Or see this region's nucleotide sequence