Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00160

Experiment: Chloramphenicol 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00155 and ABZR86_RS00160 are separated by 174 nucleotidesABZR86_RS00160 and ABZR86_RS00165 are separated by 364 nucleotides ABZR86_RS00155: ABZR86_RS00155 - MFS transporter, at 29,189 to 30,475 _RS00155 ABZR86_RS00160: ABZR86_RS00160 - hypothetical protein, at 30,650 to 31,117 _RS00160 ABZR86_RS00165: ABZR86_RS00165 - hypothetical protein, at 31,482 to 32,825 _RS00165 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.732 kb on + strand, within ABZR86_RS00155at 29.732 kb on + strand, within ABZR86_RS00155at 29.732 kb on + strand, within ABZR86_RS00155at 29.733 kb on - strand, within ABZR86_RS00155at 29.834 kb on + strand, within ABZR86_RS00155at 29.834 kb on + strand, within ABZR86_RS00155at 29.835 kb on - strand, within ABZR86_RS00155at 29.963 kb on + strand, within ABZR86_RS00155at 30.047 kb on + strand, within ABZR86_RS00155at 30.110 kb on + strand, within ABZR86_RS00155at 30.110 kb on + strand, within ABZR86_RS00155at 30.110 kb on + strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.111 kb on - strand, within ABZR86_RS00155at 30.161 kb on + strand, within ABZR86_RS00155at 30.161 kb on + strand, within ABZR86_RS00155at 30.161 kb on + strand, within ABZR86_RS00155at 30.161 kb on + strand, within ABZR86_RS00155at 30.369 kb on - strandat 30.533 kb on + strandat 30.534 kb on - strandat 30.534 kb on - strandat 30.556 kb on + strandat 30.556 kb on + strandat 30.556 kb on + strandat 30.556 kb on + strandat 30.557 kb on - strandat 30.594 kb on + strandat 30.595 kb on - strandat 30.700 kb on + strand, within ABZR86_RS00160at 30.701 kb on - strand, within ABZR86_RS00160at 30.772 kb on - strand, within ABZR86_RS00160at 30.942 kb on + strand, within ABZR86_RS00160at 30.942 kb on + strand, within ABZR86_RS00160at 30.942 kb on + strand, within ABZR86_RS00160at 30.942 kb on + strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 30.943 kb on - strand, within ABZR86_RS00160at 31.209 kb on + strandat 31.209 kb on + strandat 31.210 kb on - strandat 31.210 kb on - strandat 31.241 kb on - strandat 31.288 kb on - strandat 31.462 kb on - strandat 31.462 kb on - strandat 31.462 kb on - strandat 31.505 kb on - strandat 31.505 kb on - strandat 31.593 kb on + strandat 31.594 kb on - strandat 31.594 kb on - strandat 31.594 kb on - strandat 31.594 kb on - strandat 31.717 kb on - strand, within ABZR86_RS00165at 31.737 kb on + strand, within ABZR86_RS00165at 31.738 kb on - strand, within ABZR86_RS00165at 31.801 kb on - strand, within ABZR86_RS00165at 31.822 kb on - strand, within ABZR86_RS00165at 31.921 kb on - strand, within ABZR86_RS00165at 31.921 kb on - strand, within ABZR86_RS00165at 31.921 kb on - strand, within ABZR86_RS00165at 31.935 kb on + strand, within ABZR86_RS00165at 31.935 kb on + strand, within ABZR86_RS00165at 31.935 kb on + strand, within ABZR86_RS00165at 31.935 kb on + strand, within ABZR86_RS00165at 31.936 kb on - strand, within ABZR86_RS00165at 31.936 kb on - strand, within ABZR86_RS00165at 31.936 kb on - strand, within ABZR86_RS00165at 31.936 kb on - strand, within ABZR86_RS00165at 31.936 kb on - strand, within ABZR86_RS00165at 31.953 kb on + strand, within ABZR86_RS00165at 31.953 kb on + strand, within ABZR86_RS00165at 31.954 kb on - strand, within ABZR86_RS00165at 32.115 kb on + strand, within ABZR86_RS00165at 32.115 kb on + strand, within ABZR86_RS00165at 32.116 kb on - strand, within ABZR86_RS00165at 32.116 kb on - strand, within ABZR86_RS00165at 32.116 kb on - strand, within ABZR86_RS00165at 32.116 kb on - strand, within ABZR86_RS00165at 32.116 kb on - strand, within ABZR86_RS00165

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml
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29,732 + ABZR86_RS00155 0.42 +0.4
29,732 + ABZR86_RS00155 0.42 +1.0
29,732 + ABZR86_RS00155 0.42 -1.6
29,733 - ABZR86_RS00155 0.42 +0.2
29,834 + ABZR86_RS00155 0.50 +0.9
29,834 + ABZR86_RS00155 0.50 +0.2
29,835 - ABZR86_RS00155 0.50 -0.0
29,963 + ABZR86_RS00155 0.60 +0.7
30,047 + ABZR86_RS00155 0.67 -0.2
30,110 + ABZR86_RS00155 0.72 +1.1
30,110 + ABZR86_RS00155 0.72 -0.4
30,110 + ABZR86_RS00155 0.72 -0.2
30,111 - ABZR86_RS00155 0.72 +0.1
30,111 - ABZR86_RS00155 0.72 +0.3
30,111 - ABZR86_RS00155 0.72 +0.5
30,111 - ABZR86_RS00155 0.72 +0.6
30,111 - ABZR86_RS00155 0.72 +1.1
30,111 - ABZR86_RS00155 0.72 +0.3
30,111 - ABZR86_RS00155 0.72 +0.9
30,161 + ABZR86_RS00155 0.76 +0.4
30,161 + ABZR86_RS00155 0.76 +0.1
30,161 + ABZR86_RS00155 0.76 +0.5
30,161 + ABZR86_RS00155 0.76 -2.0
30,369 - -3.3
30,533 + +0.1
30,534 - +0.5
30,534 - +0.7
30,556 + +0.1
30,556 + +0.8
30,556 + +0.0
30,556 + +1.1
30,557 - -0.9
30,594 + +0.0
30,595 - +0.6
30,700 + ABZR86_RS00160 0.11 +1.6
30,701 - ABZR86_RS00160 0.11 -1.3
30,772 - ABZR86_RS00160 0.26 +0.4
30,942 + ABZR86_RS00160 0.62 -2.0
30,942 + ABZR86_RS00160 0.62 -0.8
30,942 + ABZR86_RS00160 0.62 -0.5
30,942 + ABZR86_RS00160 0.62 -0.3
30,943 - ABZR86_RS00160 0.63 +0.2
30,943 - ABZR86_RS00160 0.63 +0.5
30,943 - ABZR86_RS00160 0.63 +0.3
30,943 - ABZR86_RS00160 0.63 -0.7
30,943 - ABZR86_RS00160 0.63 -0.9
30,943 - ABZR86_RS00160 0.63 +0.3
30,943 - ABZR86_RS00160 0.63 +0.8
30,943 - ABZR86_RS00160 0.63 +0.5
30,943 - ABZR86_RS00160 0.63 -0.5
30,943 - ABZR86_RS00160 0.63 -0.5
31,209 + +0.3
31,209 + +0.4
31,210 - -0.1
31,210 - +0.0
31,241 - +0.0
31,288 - -0.2
31,462 - +1.8
31,462 - -0.7
31,462 - -0.2
31,505 - -0.5
31,505 - +0.1
31,593 + -1.1
31,594 - +1.2
31,594 - +0.7
31,594 - -0.1
31,594 - -0.6
31,717 - ABZR86_RS00165 0.17 +0.0
31,737 + ABZR86_RS00165 0.19 +0.1
31,738 - ABZR86_RS00165 0.19 -0.1
31,801 - ABZR86_RS00165 0.24 +0.3
31,822 - ABZR86_RS00165 0.25 +0.3
31,921 - ABZR86_RS00165 0.33 +0.8
31,921 - ABZR86_RS00165 0.33 -1.1
31,921 - ABZR86_RS00165 0.33 -0.4
31,935 + ABZR86_RS00165 0.34 +0.4
31,935 + ABZR86_RS00165 0.34 +0.6
31,935 + ABZR86_RS00165 0.34 -0.4
31,935 + ABZR86_RS00165 0.34 +0.5
31,936 - ABZR86_RS00165 0.34 +0.5
31,936 - ABZR86_RS00165 0.34 -0.3
31,936 - ABZR86_RS00165 0.34 +0.6
31,936 - ABZR86_RS00165 0.34 +0.5
31,936 - ABZR86_RS00165 0.34 +1.4
31,953 + ABZR86_RS00165 0.35 +0.1
31,953 + ABZR86_RS00165 0.35 +0.5
31,954 - ABZR86_RS00165 0.35 +0.4
32,115 + ABZR86_RS00165 0.47 -0.0
32,115 + ABZR86_RS00165 0.47 +0.1
32,116 - ABZR86_RS00165 0.47 -0.2
32,116 - ABZR86_RS00165 0.47 +0.5
32,116 - ABZR86_RS00165 0.47 +1.0
32,116 - ABZR86_RS00165 0.47 +0.2
32,116 - ABZR86_RS00165 0.47 -0.3

Or see this region's nucleotide sequence