Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00145 and ABZR86_RS00150 are separated by 61 nucleotides ABZR86_RS00150 and ABZR86_RS00155 are separated by 34 nucleotides ABZR86_RS00155 and ABZR86_RS00160 are separated by 174 nucleotides
ABZR86_RS00145: ABZR86_RS00145 - MarR family transcriptional regulator, at 28,068 to 28,535
_RS00145
ABZR86_RS00150: ABZR86_RS00150 - isochorismatase family protein, at 28,597 to 29,154
_RS00150
ABZR86_RS00155: ABZR86_RS00155 - MFS transporter, at 29,189 to 30,475
_RS00155
ABZR86_RS00160: ABZR86_RS00160 - hypothetical protein, at 30,650 to 31,117
_RS00160
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.672 kb on - strand, within ABZR86_RS00150 at 29.193 kb on + strand at 29.193 kb on + strand at 29.219 kb on + strand at 29.220 kb on - strand at 29.220 kb on - strand at 29.225 kb on + strand at 29.226 kb on - strand at 29.226 kb on - strand at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.517 kb on - strand, within ABZR86_RS00155 at 29.517 kb on - strand, within ABZR86_RS00155 at 29.607 kb on + strand, within ABZR86_RS00155 at 29.607 kb on + strand, within ABZR86_RS00155 at 29.607 kb on + strand, within ABZR86_RS00155 at 29.608 kb on - strand, within ABZR86_RS00155 at 29.732 kb on + strand, within ABZR86_RS00155 at 29.732 kb on + strand, within ABZR86_RS00155 at 29.732 kb on + strand, within ABZR86_RS00155 at 29.733 kb on - strand, within ABZR86_RS00155 at 29.834 kb on + strand, within ABZR86_RS00155 at 29.834 kb on + strand, within ABZR86_RS00155 at 29.835 kb on - strand, within ABZR86_RS00155 at 29.963 kb on + strand, within ABZR86_RS00155 at 30.047 kb on + strand, within ABZR86_RS00155 at 30.110 kb on + strand, within ABZR86_RS00155 at 30.110 kb on + strand, within ABZR86_RS00155 at 30.110 kb on + strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.111 kb on - strand, within ABZR86_RS00155 at 30.161 kb on + strand, within ABZR86_RS00155 at 30.161 kb on + strand, within ABZR86_RS00155 at 30.161 kb on + strand, within ABZR86_RS00155 at 30.161 kb on + strand, within ABZR86_RS00155 at 30.369 kb on - strand at 30.533 kb on + strand at 30.534 kb on - strand at 30.534 kb on - strand at 30.556 kb on + strand at 30.556 kb on + strand at 30.556 kb on + strand at 30.556 kb on + strand at 30.557 kb on - strand at 30.594 kb on + strand at 30.595 kb on - strand at 30.700 kb on + strand, within ABZR86_RS00160 at 30.701 kb on - strand, within ABZR86_RS00160 at 30.772 kb on - strand, within ABZR86_RS00160 at 30.942 kb on + strand, within ABZR86_RS00160 at 30.942 kb on + strand, within ABZR86_RS00160 at 30.942 kb on + strand, within ABZR86_RS00160 at 30.942 kb on + strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 30.943 kb on - strand, within ABZR86_RS00160 at 31.209 kb on + strand at 31.209 kb on + strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.241 kb on - strand at 31.288 kb on - strand at 31.462 kb on - strand at 31.462 kb on - strand at 31.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 28,672 - ABZR86_RS00150 0.13 +0.6 29,193 + -1.1 29,193 + -0.1 29,219 + -1.3 29,220 - +0.3 29,220 - -0.6 29,225 + -0.5 29,226 - -0.3 29,226 - +0.4 29,516 + ABZR86_RS00155 0.25 +0.5 29,516 + ABZR86_RS00155 0.25 -0.6 29,516 + ABZR86_RS00155 0.25 -1.0 29,516 + ABZR86_RS00155 0.25 -0.1 29,516 + ABZR86_RS00155 0.25 -0.8 29,516 + ABZR86_RS00155 0.25 -0.1 29,517 - ABZR86_RS00155 0.25 +0.3 29,517 - ABZR86_RS00155 0.25 -2.4 29,607 + ABZR86_RS00155 0.32 +0.3 29,607 + ABZR86_RS00155 0.32 +0.5 29,607 + ABZR86_RS00155 0.32 +0.0 29,608 - ABZR86_RS00155 0.33 +0.5 29,732 + ABZR86_RS00155 0.42 +0.4 29,732 + ABZR86_RS00155 0.42 +1.0 29,732 + ABZR86_RS00155 0.42 -1.6 29,733 - ABZR86_RS00155 0.42 +0.2 29,834 + ABZR86_RS00155 0.50 +0.9 29,834 + ABZR86_RS00155 0.50 +0.2 29,835 - ABZR86_RS00155 0.50 -0.0 29,963 + ABZR86_RS00155 0.60 +0.7 30,047 + ABZR86_RS00155 0.67 -0.2 30,110 + ABZR86_RS00155 0.72 +1.1 30,110 + ABZR86_RS00155 0.72 -0.4 30,110 + ABZR86_RS00155 0.72 -0.2 30,111 - ABZR86_RS00155 0.72 +0.1 30,111 - ABZR86_RS00155 0.72 +0.3 30,111 - ABZR86_RS00155 0.72 +0.5 30,111 - ABZR86_RS00155 0.72 +0.6 30,111 - ABZR86_RS00155 0.72 +1.1 30,111 - ABZR86_RS00155 0.72 +0.3 30,111 - ABZR86_RS00155 0.72 +0.9 30,161 + ABZR86_RS00155 0.76 +0.4 30,161 + ABZR86_RS00155 0.76 +0.1 30,161 + ABZR86_RS00155 0.76 +0.5 30,161 + ABZR86_RS00155 0.76 -2.0 30,369 - -3.3 30,533 + +0.1 30,534 - +0.5 30,534 - +0.7 30,556 + +0.1 30,556 + +0.8 30,556 + +0.0 30,556 + +1.1 30,557 - -0.9 30,594 + +0.0 30,595 - +0.6 30,700 + ABZR86_RS00160 0.11 +1.6 30,701 - ABZR86_RS00160 0.11 -1.3 30,772 - ABZR86_RS00160 0.26 +0.4 30,942 + ABZR86_RS00160 0.62 -2.0 30,942 + ABZR86_RS00160 0.62 -0.8 30,942 + ABZR86_RS00160 0.62 -0.5 30,942 + ABZR86_RS00160 0.62 -0.3 30,943 - ABZR86_RS00160 0.63 +0.2 30,943 - ABZR86_RS00160 0.63 +0.5 30,943 - ABZR86_RS00160 0.63 +0.3 30,943 - ABZR86_RS00160 0.63 -0.7 30,943 - ABZR86_RS00160 0.63 -0.9 30,943 - ABZR86_RS00160 0.63 +0.3 30,943 - ABZR86_RS00160 0.63 +0.8 30,943 - ABZR86_RS00160 0.63 +0.5 30,943 - ABZR86_RS00160 0.63 -0.5 30,943 - ABZR86_RS00160 0.63 -0.5 31,209 + +0.3 31,209 + +0.4 31,210 - -0.1 31,210 - +0.0 31,241 - +0.0 31,288 - -0.2 31,462 - +1.8 31,462 - -0.7 31,462 - -0.2
Or see this region's nucleotide sequence