Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_92 and Pf1N1B4_93 are separated by 232 nucleotides Pf1N1B4_93 and Pf1N1B4_94 are separated by 23 nucleotides
Pf1N1B4_92 - Porphobilinogen synthase (EC 4.2.1.24), at 96,864 to 97,838
_92
Pf1N1B4_93 - Phenazine biosynthesis protein PhzF like, at 98,071 to 98,913
_93
Pf1N1B4_94 - Glutathione S-transferase (EC 2.5.1.18), at 98,937 to 99,644
_94
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.178 kb on - strand, within Pf1N1B4_92 at 97.178 kb on - strand, within Pf1N1B4_92 at 97.462 kb on + strand, within Pf1N1B4_92 at 97.559 kb on + strand, within Pf1N1B4_92 at 97.631 kb on - strand, within Pf1N1B4_92 at 97.890 kb on + strand at 97.891 kb on - strand at 98.084 kb on - strand at 98.094 kb on + strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.192 kb on + strand, within Pf1N1B4_93 at 98.192 kb on + strand, within Pf1N1B4_93 at 98.192 kb on + strand, within Pf1N1B4_93 at 98.193 kb on - strand, within Pf1N1B4_93 at 98.193 kb on - strand, within Pf1N1B4_93 at 98.193 kb on - strand, within Pf1N1B4_93 at 98.887 kb on + strand at 98.887 kb on + strand at 98.888 kb on - strand at 99.055 kb on + strand, within Pf1N1B4_94 at 99.055 kb on + strand, within Pf1N1B4_94 at 99.055 kb on + strand, within Pf1N1B4_94 at 99.056 kb on - strand, within Pf1N1B4_94 at 99.056 kb on - strand at 99.056 kb on - strand at 99.056 kb on - strand, within Pf1N1B4_94 at 99.109 kb on + strand, within Pf1N1B4_94 at 99.188 kb on - strand at 99.215 kb on - strand, within Pf1N1B4_94 at 99.358 kb on + strand, within Pf1N1B4_94 at 99.359 kb on - strand, within Pf1N1B4_94 at 99.574 kb on + strand at 99.575 kb on - strand at 99.644 kb on + strand at 99.644 kb on + strand at 99.680 kb on + strand at 99.680 kb on + strand at 99.681 kb on - strand at 99.685 kb on + strand at 99.686 kb on - strand at 99.772 kb on + strand at 99.772 kb on + strand at 99.772 kb on + strand at 99.773 kb on - strand at 99.773 kb on - strand at 99.773 kb on - strand at 99.773 kb on - strand at 99.781 kb on + strand at 99.782 kb on - strand at 99.782 kb on - strand at 99.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 97,178 - Pf1N1B4_92 0.32 -0.2 97,178 - Pf1N1B4_92 0.32 +0.1 97,462 + Pf1N1B4_92 0.61 +0.4 97,559 + Pf1N1B4_92 0.71 -0.2 97,631 - Pf1N1B4_92 0.79 +1.0 97,890 + -0.2 97,891 - +0.8 98,084 - -0.1 98,094 + -1.2 98,095 - -0.9 98,095 - +1.4 98,095 - +0.2 98,095 - -0.4 98,095 - +2.0 98,095 - +0.0 98,192 + Pf1N1B4_93 0.14 +1.0 98,192 + Pf1N1B4_93 0.14 +0.6 98,192 + Pf1N1B4_93 0.14 +0.6 98,193 - Pf1N1B4_93 0.14 +1.2 98,193 - Pf1N1B4_93 0.14 -0.4 98,193 - Pf1N1B4_93 0.14 +0.3 98,887 + +0.0 98,887 + +1.1 98,888 - +0.8 99,055 + Pf1N1B4_94 0.17 -0.8 99,055 + Pf1N1B4_94 0.17 +1.2 99,055 + Pf1N1B4_94 0.17 +0.2 99,056 - Pf1N1B4_94 0.17 -1.2 99,056 - +1.8 99,056 - +1.8 99,056 - Pf1N1B4_94 0.17 +0.8 99,109 + Pf1N1B4_94 0.24 -0.5 99,188 - +0.2 99,215 - Pf1N1B4_94 0.39 -1.8 99,358 + Pf1N1B4_94 0.59 +1.2 99,359 - Pf1N1B4_94 0.60 -1.2 99,574 + +0.3 99,575 - -0.7 99,644 + -1.4 99,644 + +1.6 99,680 + -2.2 99,680 + -0.1 99,681 - -1.8 99,685 + +0.9 99,686 - -0.2 99,772 + +0.4 99,772 + -2.4 99,772 + +0.4 99,773 - +1.6 99,773 - +0.4 99,773 - +0.8 99,773 - +0.5 99,781 + -1.5 99,782 - -0.2 99,782 - +1.4 99,843 + -0.8
Or see this region's nucleotide sequence