Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_680 and Pf1N1B4_681 overlap by 8 nucleotides Pf1N1B4_681 and Pf1N1B4_682 are separated by 361 nucleotides Pf1N1B4_682 and Pf1N1B4_683 are separated by 42 nucleotides
Pf1N1B4_680 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 777,151 to 778,086
_680
Pf1N1B4_681 - FOG: GGDEF domain, at 778,079 to 779,185
_681
Pf1N1B4_682 - hypothetical protein, at 779,547 to 779,699
_682
Pf1N1B4_683 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 779,742 to 781,265
_683
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2 at 777.163 kb on + strand at 777.209 kb on + strand at 777.210 kb on - strand at 777.210 kb on - strand at 777.383 kb on + strand, within Pf1N1B4_680 at 777.383 kb on + strand, within Pf1N1B4_680 at 777.384 kb on - strand, within Pf1N1B4_680 at 777.534 kb on - strand, within Pf1N1B4_680 at 777.680 kb on + strand, within Pf1N1B4_680 at 777.761 kb on - strand, within Pf1N1B4_680 at 777.990 kb on + strand at 777.991 kb on - strand, within Pf1N1B4_680 at 777.991 kb on - strand, within Pf1N1B4_680 at 777.991 kb on - strand, within Pf1N1B4_680 at 777.991 kb on - strand, within Pf1N1B4_680 at 777.993 kb on - strand at 778.266 kb on - strand, within Pf1N1B4_681 at 778.651 kb on + strand, within Pf1N1B4_681 at 778.712 kb on + strand, within Pf1N1B4_681 at 778.712 kb on + strand at 778.713 kb on - strand, within Pf1N1B4_681 at 778.713 kb on - strand, within Pf1N1B4_681 at 778.873 kb on - strand, within Pf1N1B4_681 at 778.873 kb on - strand, within Pf1N1B4_681 at 778.947 kb on - strand, within Pf1N1B4_681 at 778.947 kb on - strand, within Pf1N1B4_681 at 779.076 kb on + strand at 779.077 kb on - strand at 779.125 kb on - strand at 779.125 kb on - strand at 779.125 kb on - strand at 779.226 kb on + strand at 779.226 kb on + strand at 779.226 kb on + strand at 779.227 kb on - strand at 779.227 kb on - strand at 779.231 kb on + strand at 779.232 kb on - strand at 779.232 kb on - strand at 779.265 kb on + strand at 779.266 kb on - strand at 779.328 kb on - strand at 779.407 kb on - strand at 779.407 kb on - strand at 779.407 kb on - strand at 779.407 kb on - strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.474 kb on + strand at 779.475 kb on - strand at 779.475 kb on - strand at 779.475 kb on - strand at 779.475 kb on - strand at 779.475 kb on - strand at 779.475 kb on - strand at 779.475 kb on - strand at 779.544 kb on + strand at 779.544 kb on + strand at 779.545 kb on - strand at 779.545 kb on - strand at 779.612 kb on + strand, within Pf1N1B4_682 at 779.613 kb on - strand, within Pf1N1B4_682 at 779.707 kb on - strand at 779.806 kb on - strand at 779.808 kb on + strand at 779.848 kb on - strand at 779.848 kb on - strand at 779.848 kb on - strand at 780.049 kb on - strand, within Pf1N1B4_683 at 780.169 kb on + strand, within Pf1N1B4_683
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 777,163 + -0.3 777,209 + -0.6 777,210 - -1.2 777,210 - -0.6 777,383 + Pf1N1B4_680 0.25 +0.2 777,383 + Pf1N1B4_680 0.25 +0.2 777,384 - Pf1N1B4_680 0.25 +0.2 777,534 - Pf1N1B4_680 0.41 +0.6 777,680 + Pf1N1B4_680 0.57 +0.7 777,761 - Pf1N1B4_680 0.65 -0.4 777,990 + +1.0 777,991 - Pf1N1B4_680 0.90 -0.4 777,991 - Pf1N1B4_680 0.90 -0.3 777,991 - Pf1N1B4_680 0.90 -0.7 777,991 - Pf1N1B4_680 0.90 -0.3 777,993 - -0.0 778,266 - Pf1N1B4_681 0.17 -2.3 778,651 + Pf1N1B4_681 0.52 +0.6 778,712 + Pf1N1B4_681 0.57 +0.7 778,712 + -0.3 778,713 - Pf1N1B4_681 0.57 -0.6 778,713 - Pf1N1B4_681 0.57 -1.6 778,873 - Pf1N1B4_681 0.72 -0.0 778,873 - Pf1N1B4_681 0.72 -1.5 778,947 - Pf1N1B4_681 0.78 -1.7 778,947 - Pf1N1B4_681 0.78 -0.6 779,076 + -2.5 779,077 - -0.3 779,125 - -0.0 779,125 - -1.3 779,125 - +1.0 779,226 + -0.3 779,226 + -1.6 779,226 + -0.6 779,227 - -0.4 779,227 - +1.0 779,231 + -2.0 779,232 - -0.6 779,232 - -0.6 779,265 + -0.2 779,266 - -1.3 779,328 - -1.8 779,407 - -0.9 779,407 - -0.0 779,407 - -0.0 779,407 - +0.1 779,474 + +0.8 779,474 + -1.6 779,474 + -1.0 779,474 + -0.9 779,474 + +0.6 779,474 + -0.2 779,474 + -0.0 779,474 + +1.6 779,474 + +1.0 779,475 - +0.9 779,475 - -0.5 779,475 - -0.0 779,475 - +1.0 779,475 - -0.1 779,475 - +2.0 779,475 - +0.1 779,544 + -2.2 779,544 + +0.3 779,545 - -0.4 779,545 - -0.0 779,612 + Pf1N1B4_682 0.42 +0.6 779,613 - Pf1N1B4_682 0.43 -0.0 779,707 - -0.3 779,806 - +1.0 779,808 + +0.4 779,848 - -0.6 779,848 - -0.7 779,848 - -1.0 780,049 - Pf1N1B4_683 0.20 -1.3 780,169 + Pf1N1B4_683 0.28 -1.1
Or see this region's nucleotide sequence