Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5953 and Pf1N1B4_5954 are separated by 204 nucleotides Pf1N1B4_5954 and Pf1N1B4_5955 are separated by 411 nucleotides
Pf1N1B4_5953 - Universal stress protein family 5, at 401,375 to 402,277
_5953
Pf1N1B4_5954 - hypothetical protein, at 402,482 to 403,000
_5954
Pf1N1B4_5955 - Permease of the major facilitator superfamily, at 403,412 to 404,641
_5955
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 401.583 kb on + strand, within Pf1N1B4_5953 at 401.678 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.693 kb on + strand at 401.694 kb on - strand, within Pf1N1B4_5953 at 401.700 kb on + strand, within Pf1N1B4_5953 at 401.700 kb on + strand, within Pf1N1B4_5953 at 401.706 kb on + strand at 401.707 kb on - strand, within Pf1N1B4_5953 at 402.170 kb on - strand at 402.251 kb on + strand at 402.252 kb on - strand at 402.252 kb on - strand at 402.252 kb on - strand at 402.377 kb on + strand at 402.386 kb on + strand at 402.386 kb on + strand at 402.386 kb on + strand at 402.387 kb on - strand at 402.483 kb on + strand at 402.483 kb on + strand at 402.484 kb on - strand at 402.496 kb on - strand at 402.623 kb on + strand, within Pf1N1B4_5954 at 402.705 kb on - strand, within Pf1N1B4_5954 at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.722 kb on + strand at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.723 kb on - strand, within Pf1N1B4_5954 at 402.774 kb on + strand, within Pf1N1B4_5954 at 402.925 kb on - strand, within Pf1N1B4_5954 at 402.970 kb on - strand at 403.003 kb on - strand at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 401,583 + Pf1N1B4_5953 0.23 -0.2 401,678 + Pf1N1B4_5953 0.34 +1.7 401,680 + Pf1N1B4_5953 0.34 +0.7 401,680 + Pf1N1B4_5953 0.34 -0.3 401,680 + Pf1N1B4_5953 0.34 -0.1 401,680 + Pf1N1B4_5953 0.34 -0.7 401,680 + Pf1N1B4_5953 0.34 +0.7 401,680 + Pf1N1B4_5953 0.34 +0.0 401,680 + Pf1N1B4_5953 0.34 -0.1 401,681 - Pf1N1B4_5953 0.34 +1.3 401,681 - Pf1N1B4_5953 0.34 -1.7 401,681 - Pf1N1B4_5953 0.34 -0.2 401,681 - Pf1N1B4_5953 0.34 +0.3 401,681 - Pf1N1B4_5953 0.34 +1.3 401,681 - Pf1N1B4_5953 0.34 +1.3 401,681 - Pf1N1B4_5953 0.34 -0.1 401,681 - Pf1N1B4_5953 0.34 +0.3 401,681 - Pf1N1B4_5953 0.34 +1.7 401,681 - Pf1N1B4_5953 0.34 +0.1 401,681 - Pf1N1B4_5953 0.34 +1.0 401,681 - Pf1N1B4_5953 0.34 -1.1 401,693 + +0.7 401,694 - Pf1N1B4_5953 0.35 +0.3 401,700 + Pf1N1B4_5953 0.36 +0.1 401,700 + Pf1N1B4_5953 0.36 +0.3 401,706 + -0.3 401,707 - Pf1N1B4_5953 0.37 -1.3 402,170 - -1.3 402,251 + +0.7 402,252 - -0.6 402,252 - +0.5 402,252 - +0.7 402,377 + -1.3 402,386 + +0.1 402,386 + +0.1 402,386 + +1.2 402,387 - +0.3 402,483 + +0.1 402,483 + +1.8 402,484 - -0.7 402,496 - -0.9 402,623 + Pf1N1B4_5954 0.27 -0.6 402,705 - Pf1N1B4_5954 0.43 +0.7 402,722 + Pf1N1B4_5954 0.46 +0.3 402,722 + Pf1N1B4_5954 0.46 +1.2 402,722 + +1.4 402,722 + Pf1N1B4_5954 0.46 +0.4 402,723 - Pf1N1B4_5954 0.46 +0.1 402,774 + Pf1N1B4_5954 0.56 +1.0 402,925 - Pf1N1B4_5954 0.85 -1.3 402,970 - -0.3 403,003 - +1.0 403,578 + Pf1N1B4_5955 0.13 -0.3 403,578 + Pf1N1B4_5955 0.13 -1.1 403,578 + Pf1N1B4_5955 0.13 -0.7 403,920 + Pf1N1B4_5955 0.41 -1.3 403,920 + Pf1N1B4_5955 0.41 +0.7
Or see this region's nucleotide sequence