Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5907 and Pf1N1B4_5908 are separated by 89 nucleotides Pf1N1B4_5908 and Pf1N1B4_5909 are separated by 70 nucleotides Pf1N1B4_5909 and Pf1N1B4_5910 are separated by 9 nucleotides Pf1N1B4_5910 and Pf1N1B4_5911 overlap by 8 nucleotides
Pf1N1B4_5907 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 349,909 to 351,336
_5907
Pf1N1B4_5908 - Nicotinamidase family protein YcaC, at 351,426 to 352,052
_5908
Pf1N1B4_5909 - Exoenzymes regulatory protein AepA precursor, at 352,123 to 353,961
_5909
Pf1N1B4_5910 - putative membrane protein, at 353,971 to 354,561
_5910
Pf1N1B4_5911 - DoxX family protein, at 354,554 to 354,970
_5911
Position (kb) 352
353
354 Strain fitness (log2 ratio) -1
0
1
2 at 351.166 kb on + strand, within Pf1N1B4_5907 at 351.167 kb on - strand, within Pf1N1B4_5907 at 351.367 kb on + strand at 351.367 kb on + strand at 351.367 kb on + strand at 351.391 kb on + strand at 351.391 kb on + strand at 351.469 kb on + strand at 351.709 kb on - strand, within Pf1N1B4_5908 at 352.005 kb on + strand at 352.037 kb on - strand at 352.037 kb on - strand at 352.079 kb on - strand at 352.079 kb on - strand at 352.124 kb on + strand at 352.124 kb on + strand at 352.124 kb on + strand at 352.617 kb on - strand, within Pf1N1B4_5909 at 352.617 kb on - strand, within Pf1N1B4_5909 at 352.638 kb on - strand, within Pf1N1B4_5909 at 352.638 kb on - strand, within Pf1N1B4_5909 at 352.638 kb on - strand, within Pf1N1B4_5909 at 352.638 kb on - strand, within Pf1N1B4_5909 at 352.638 kb on - strand, within Pf1N1B4_5909 at 352.752 kb on - strand, within Pf1N1B4_5909 at 352.752 kb on - strand at 352.931 kb on + strand, within Pf1N1B4_5909 at 352.931 kb on + strand at 353.183 kb on + strand, within Pf1N1B4_5909 at 353.184 kb on - strand, within Pf1N1B4_5909 at 353.237 kb on + strand, within Pf1N1B4_5909 at 353.525 kb on + strand, within Pf1N1B4_5909 at 353.732 kb on + strand, within Pf1N1B4_5909 at 354.048 kb on - strand, within Pf1N1B4_5910 at 354.098 kb on + strand, within Pf1N1B4_5910 at 354.801 kb on - strand at 354.858 kb on + strand, within Pf1N1B4_5911 at 354.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 351,166 + Pf1N1B4_5907 0.88 -0.7 351,167 - Pf1N1B4_5907 0.88 -0.7 351,367 + -0.9 351,367 + -0.7 351,367 + +0.7 351,391 + -0.3 351,391 + +0.3 351,469 + -0.4 351,709 - Pf1N1B4_5908 0.45 -0.9 352,005 + +0.4 352,037 - -0.1 352,037 - +1.3 352,079 - +1.3 352,079 - +1.3 352,124 + +0.7 352,124 + +2.3 352,124 + -0.3 352,617 - Pf1N1B4_5909 0.27 +0.9 352,617 - Pf1N1B4_5909 0.27 +0.8 352,638 - Pf1N1B4_5909 0.28 +0.6 352,638 - Pf1N1B4_5909 0.28 -1.3 352,638 - Pf1N1B4_5909 0.28 -0.5 352,638 - Pf1N1B4_5909 0.28 +0.1 352,638 - Pf1N1B4_5909 0.28 +0.3 352,752 - Pf1N1B4_5909 0.34 +1.1 352,752 - +1.1 352,931 + Pf1N1B4_5909 0.44 +2.5 352,931 + +2.4 353,183 + Pf1N1B4_5909 0.58 -0.9 353,184 - Pf1N1B4_5909 0.58 +0.7 353,237 + Pf1N1B4_5909 0.61 +0.7 353,525 + Pf1N1B4_5909 0.76 +0.7 353,732 + Pf1N1B4_5909 0.87 -0.9 354,048 - Pf1N1B4_5910 0.13 +1.3 354,098 + Pf1N1B4_5910 0.21 -1.5 354,801 - +1.7 354,858 + Pf1N1B4_5911 0.73 +0.1 354,858 + -0.3
Or see this region's nucleotide sequence