Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5744 and Pf1N1B4_5745 overlap by 7 nucleotides Pf1N1B4_5745 and Pf1N1B4_5746 are separated by 10 nucleotides
Pf1N1B4_5744 - FIG138517: Putative lipid carrier protein, at 186,266 to 186,736
_5744
Pf1N1B4_5745 - FIG139928: Putative protease, at 186,730 to 187,620
_5745
Pf1N1B4_5746 - FIG139552: Putative protease, at 187,631 to 188,626
_5746
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1 at 185.796 kb on - strand at 186.092 kb on + strand at 186.118 kb on - strand at 186.161 kb on - strand at 186.161 kb on - strand at 186.419 kb on - strand, within Pf1N1B4_5744 at 186.450 kb on - strand at 186.840 kb on - strand, within Pf1N1B4_5745 at 187.094 kb on + strand, within Pf1N1B4_5745 at 187.263 kb on - strand, within Pf1N1B4_5745 at 187.788 kb on + strand, within Pf1N1B4_5746 at 187.788 kb on + strand at 188.085 kb on + strand, within Pf1N1B4_5746 at 188.086 kb on - strand at 188.123 kb on + strand, within Pf1N1B4_5746 at 188.123 kb on + strand, within Pf1N1B4_5746 at 188.124 kb on - strand, within Pf1N1B4_5746 at 188.124 kb on - strand at 188.180 kb on + strand, within Pf1N1B4_5746 at 188.181 kb on - strand, within Pf1N1B4_5746 at 188.241 kb on + strand, within Pf1N1B4_5746 at 188.242 kb on - strand, within Pf1N1B4_5746 at 188.322 kb on + strand, within Pf1N1B4_5746 at 188.322 kb on + strand, within Pf1N1B4_5746 at 188.322 kb on + strand, within Pf1N1B4_5746 at 188.553 kb on + strand at 188.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 185,796 - +0.1 186,092 + -0.2 186,118 - +0.4 186,161 - -0.1 186,161 - +0.1 186,419 - Pf1N1B4_5744 0.32 -1.0 186,450 - +0.0 186,840 - Pf1N1B4_5745 0.12 -0.4 187,094 + Pf1N1B4_5745 0.41 +0.8 187,263 - Pf1N1B4_5745 0.60 +0.9 187,788 + Pf1N1B4_5746 0.16 -1.0 187,788 + +1.6 188,085 + Pf1N1B4_5746 0.46 -0.4 188,086 - +0.6 188,123 + Pf1N1B4_5746 0.49 -1.0 188,123 + Pf1N1B4_5746 0.49 -0.7 188,124 - Pf1N1B4_5746 0.49 -1.0 188,124 - -1.7 188,180 + Pf1N1B4_5746 0.55 -1.0 188,181 - Pf1N1B4_5746 0.55 -1.4 188,241 + Pf1N1B4_5746 0.61 +1.1 188,242 - Pf1N1B4_5746 0.61 +0.6 188,322 + Pf1N1B4_5746 0.69 +0.6 188,322 + Pf1N1B4_5746 0.69 +0.4 188,322 + Pf1N1B4_5746 0.69 +0.2 188,553 + -0.7 188,554 - +0.6
Or see this region's nucleotide sequence