Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5728

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5726 and Pf1N1B4_5727 are separated by 15 nucleotidesPf1N1B4_5727 and Pf1N1B4_5728 are separated by 5 nucleotidesPf1N1B4_5728 and Pf1N1B4_5729 are separated by 32 nucleotides Pf1N1B4_5726 - Ferredoxin, at 165,339 to 166,667 _5726 Pf1N1B4_5727 - Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4), at 166,683 to 167,369 _5727 Pf1N1B4_5728 - hypothetical protein, at 167,375 to 167,542 _5728 Pf1N1B4_5729 - Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2), at 167,575 to 169,590 _5729 Position (kb) 167 168Strain fitness (log2 ratio) -1 0 1 2 3at 166.511 kb on - strand, within Pf1N1B4_5726at 166.511 kb on - strand, within Pf1N1B4_5726at 166.906 kb on + strand, within Pf1N1B4_5727at 167.781 kb on - strand, within Pf1N1B4_5729at 167.781 kb on - strand, within Pf1N1B4_5729at 167.781 kb on - strandat 167.781 kb on - strand, within Pf1N1B4_5729at 167.891 kb on + strand, within Pf1N1B4_5729at 167.891 kb on + strand, within Pf1N1B4_5729at 167.891 kb on + strand, within Pf1N1B4_5729at 167.894 kb on + strand, within Pf1N1B4_5729at 167.999 kb on + strandat 168.094 kb on - strand, within Pf1N1B4_5729at 168.194 kb on + strand, within Pf1N1B4_5729at 168.194 kb on + strand, within Pf1N1B4_5729at 168.320 kb on + strand, within Pf1N1B4_5729at 168.320 kb on + strand, within Pf1N1B4_5729

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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166,511 - Pf1N1B4_5726 0.88 -0.4
166,511 - Pf1N1B4_5726 0.88 +0.0
166,906 + Pf1N1B4_5727 0.32 +0.6
167,781 - Pf1N1B4_5729 0.10 +0.2
167,781 - Pf1N1B4_5729 0.10 +0.0
167,781 - -0.4
167,781 - Pf1N1B4_5729 0.10 +0.2
167,891 + Pf1N1B4_5729 0.16 -0.5
167,891 + Pf1N1B4_5729 0.16 +2.4
167,891 + Pf1N1B4_5729 0.16 +0.4
167,894 + Pf1N1B4_5729 0.16 -1.4
167,999 + -1.7
168,094 - Pf1N1B4_5729 0.26 -0.7
168,194 + Pf1N1B4_5729 0.31 +0.3
168,194 + Pf1N1B4_5729 0.31 +3.0
168,320 + Pf1N1B4_5729 0.37 +0.6
168,320 + Pf1N1B4_5729 0.37 -0.2

Or see this region's nucleotide sequence