Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5596 and Pf1N1B4_5597 are separated by 130 nucleotides Pf1N1B4_5597 and Pf1N1B4_5598 are separated by 152 nucleotides Pf1N1B4_5598 and Pf1N1B4_5599 are separated by 307 nucleotides
Pf1N1B4_5596 - Putative hydroxycinnamate transporter, at 18,620 to 19,837
_5596
Pf1N1B4_5597 - FIG005548: transport protein, at 19,968 to 21,125
_5597
Pf1N1B4_5598 - hypothetical protein, at 21,278 to 21,475
_5598
Pf1N1B4_5599 - transcriptional regulator, TetR family, at 21,783 to 22,394
_5599
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -1
0
1
2 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.286 kb on + strand, within Pf1N1B4_5596 at 19.286 kb on + strand, within Pf1N1B4_5596 at 19.310 kb on + strand, within Pf1N1B4_5596 at 19.310 kb on + strand at 19.310 kb on + strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.475 kb on + strand, within Pf1N1B4_5596 at 19.475 kb on + strand, within Pf1N1B4_5596 at 20.190 kb on + strand, within Pf1N1B4_5597 at 20.190 kb on + strand, within Pf1N1B4_5597 at 20.282 kb on - strand, within Pf1N1B4_5597 at 20.451 kb on + strand at 20.471 kb on - strand, within Pf1N1B4_5597 at 20.648 kb on - strand, within Pf1N1B4_5597 at 20.648 kb on - strand, within Pf1N1B4_5597 at 20.746 kb on + strand, within Pf1N1B4_5597 at 20.747 kb on - strand, within Pf1N1B4_5597 at 21.094 kb on - strand at 21.210 kb on + strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.316 kb on - strand, within Pf1N1B4_5598 at 21.409 kb on - strand, within Pf1N1B4_5598 at 21.409 kb on - strand, within Pf1N1B4_5598 at 21.471 kb on + strand at 21.471 kb on + strand at 21.472 kb on - strand at 21.472 kb on - strand at 21.472 kb on - strand at 21.621 kb on + strand at 21.934 kb on - strand at 22.063 kb on + strand, within Pf1N1B4_5599 at 22.064 kb on - strand, within Pf1N1B4_5599
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 19,037 + Pf1N1B4_5596 0.34 +0.6 19,037 + Pf1N1B4_5596 0.34 -0.5 19,037 + Pf1N1B4_5596 0.34 -0.4 19,037 + Pf1N1B4_5596 0.34 -1.5 19,037 + Pf1N1B4_5596 0.34 -0.7 19,286 + Pf1N1B4_5596 0.55 -1.4 19,286 + Pf1N1B4_5596 0.55 -0.0 19,310 + Pf1N1B4_5596 0.57 +0.0 19,310 + +0.6 19,310 + Pf1N1B4_5596 0.57 +0.3 19,311 - Pf1N1B4_5596 0.57 -1.1 19,311 - Pf1N1B4_5596 0.57 +1.0 19,311 - Pf1N1B4_5596 0.57 +0.5 19,475 + Pf1N1B4_5596 0.70 -0.4 19,475 + Pf1N1B4_5596 0.70 +1.2 20,190 + Pf1N1B4_5597 0.19 +0.0 20,190 + Pf1N1B4_5597 0.19 -0.2 20,282 - Pf1N1B4_5597 0.27 +0.1 20,451 + +0.6 20,471 - Pf1N1B4_5597 0.43 +1.0 20,648 - Pf1N1B4_5597 0.59 +1.2 20,648 - Pf1N1B4_5597 0.59 +2.2 20,746 + Pf1N1B4_5597 0.67 +1.4 20,747 - Pf1N1B4_5597 0.67 +0.6 21,094 - +0.3 21,210 + +0.8 21,211 - +0.2 21,211 - +0.4 21,211 - -1.4 21,211 - +0.2 21,211 - -0.8 21,316 - Pf1N1B4_5598 0.19 +1.8 21,409 - Pf1N1B4_5598 0.66 +0.0 21,409 - Pf1N1B4_5598 0.66 +0.0 21,471 + +0.0 21,471 + +1.1 21,472 - -1.0 21,472 - -0.1 21,472 - +0.3 21,621 + -0.5 21,934 - +1.1 22,063 + Pf1N1B4_5599 0.46 +0.1 22,064 - Pf1N1B4_5599 0.46 -0.8
Or see this region's nucleotide sequence