Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5562 and Pf1N1B4_5563 are separated by 443 nucleotides Pf1N1B4_5563 and Pf1N1B4_5564 overlap by 1 nucleotides Pf1N1B4_5564 and Pf1N1B4_5565 are separated by 50 nucleotides
Pf1N1B4_5562 - DNA/RNA non-specific endonuclease, at 331,067 to 331,942
_5562
Pf1N1B4_5563 - hypothetical protein, at 332,386 to 332,874
_5563
Pf1N1B4_5564 - hypothetical protein, at 332,874 to 333,167
_5564
Pf1N1B4_5565 - hypothetical protein, at 333,218 to 333,556
_5565
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.965 kb on + strand at 331.965 kb on + strand at 331.965 kb on + strand at 331.966 kb on - strand at 331.966 kb on - strand at 331.966 kb on - strand at 331.971 kb on + strand at 331.972 kb on - strand at 331.972 kb on - strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.152 kb on + strand at 332.153 kb on - strand at 332.153 kb on - strand at 332.223 kb on + strand at 332.223 kb on + strand at 332.223 kb on + strand at 332.297 kb on + strand at 332.297 kb on + strand at 332.298 kb on - strand at 332.305 kb on + strand at 332.305 kb on + strand at 332.306 kb on - strand at 332.536 kb on - strand, within Pf1N1B4_5563 at 332.536 kb on - strand, within Pf1N1B4_5563 at 332.536 kb on - strand, within Pf1N1B4_5563 at 332.619 kb on - strand, within Pf1N1B4_5563 at 332.619 kb on - strand, within Pf1N1B4_5563 at 332.619 kb on - strand, within Pf1N1B4_5563 at 332.649 kb on - strand, within Pf1N1B4_5563 at 332.667 kb on + strand, within Pf1N1B4_5563 at 332.667 kb on + strand, within Pf1N1B4_5563 at 332.667 kb on + strand, within Pf1N1B4_5563 at 332.668 kb on - strand, within Pf1N1B4_5563 at 332.668 kb on - strand, within Pf1N1B4_5563 at 332.682 kb on + strand, within Pf1N1B4_5563 at 332.682 kb on + strand, within Pf1N1B4_5563 at 332.682 kb on + strand at 332.682 kb on + strand, within Pf1N1B4_5563 at 332.686 kb on + strand, within Pf1N1B4_5563 at 332.686 kb on + strand, within Pf1N1B4_5563 at 332.687 kb on - strand, within Pf1N1B4_5563 at 332.722 kb on + strand, within Pf1N1B4_5563 at 332.722 kb on + strand, within Pf1N1B4_5563 at 332.722 kb on + strand, within Pf1N1B4_5563 at 332.722 kb on + strand, within Pf1N1B4_5563 at 332.723 kb on - strand, within Pf1N1B4_5563 at 332.875 kb on + strand at 332.876 kb on - strand at 332.876 kb on - strand at 332.938 kb on + strand, within Pf1N1B4_5564 at 332.938 kb on + strand, within Pf1N1B4_5564 at 332.938 kb on + strand, within Pf1N1B4_5564 at 332.938 kb on + strand, within Pf1N1B4_5564 at 332.938 kb on + strand at 332.938 kb on + strand, within Pf1N1B4_5564 at 332.938 kb on + strand, within Pf1N1B4_5564 at 333.006 kb on + strand, within Pf1N1B4_5564 at 333.007 kb on - strand, within Pf1N1B4_5564 at 333.007 kb on - strand at 333.017 kb on + strand, within Pf1N1B4_5564 at 333.017 kb on + strand, within Pf1N1B4_5564 at 333.018 kb on - strand, within Pf1N1B4_5564 at 333.061 kb on + strand, within Pf1N1B4_5564 at 333.061 kb on + strand, within Pf1N1B4_5564 at 333.062 kb on - strand, within Pf1N1B4_5564 at 333.062 kb on - strand, within Pf1N1B4_5564 at 333.092 kb on - strand, within Pf1N1B4_5564 at 333.139 kb on + strand at 333.139 kb on + strand at 333.139 kb on + strand at 333.139 kb on + strand at 333.140 kb on - strand at 333.140 kb on - strand at 333.140 kb on - strand at 333.140 kb on - strand at 333.273 kb on + strand, within Pf1N1B4_5565 at 333.273 kb on + strand, within Pf1N1B4_5565 at 333.291 kb on - strand, within Pf1N1B4_5565 at 333.372 kb on + strand, within Pf1N1B4_5565 at 333.372 kb on + strand, within Pf1N1B4_5565 at 333.372 kb on + strand, within Pf1N1B4_5565 at 333.372 kb on + strand, within Pf1N1B4_5565 at 333.373 kb on - strand at 333.459 kb on + strand, within Pf1N1B4_5565 at 333.459 kb on + strand, within Pf1N1B4_5565 at 333.459 kb on + strand, within Pf1N1B4_5565 at 333.466 kb on + strand, within Pf1N1B4_5565 at 333.466 kb on + strand, within Pf1N1B4_5565 at 333.466 kb on + strand, within Pf1N1B4_5565 at 333.466 kb on + strand, within Pf1N1B4_5565 at 333.467 kb on - strand, within Pf1N1B4_5565 at 333.467 kb on - strand, within Pf1N1B4_5565 at 333.478 kb on + strand, within Pf1N1B4_5565 at 333.478 kb on + strand, within Pf1N1B4_5565 at 333.510 kb on + strand, within Pf1N1B4_5565 at 333.510 kb on + strand, within Pf1N1B4_5565 at 333.510 kb on + strand, within Pf1N1B4_5565 at 333.510 kb on + strand, within Pf1N1B4_5565 at 333.510 kb on + strand, within Pf1N1B4_5565 at 333.510 kb on + strand, within Pf1N1B4_5565 at 333.511 kb on - strand, within Pf1N1B4_5565 at 333.511 kb on - strand, within Pf1N1B4_5565 at 333.542 kb on + strand at 333.633 kb on + strand at 333.633 kb on + strand at 333.633 kb on + strand at 333.633 kb on + strand at 333.634 kb on - strand at 333.634 kb on - strand at 333.634 kb on - strand at 333.674 kb on - strand at 333.703 kb on - strand at 333.703 kb on - strand at 333.736 kb on + strand at 333.737 kb on - strand at 333.737 kb on - strand at 333.762 kb on + strand at 333.768 kb on + strand at 333.768 kb on + strand at 333.769 kb on - strand at 333.775 kb on + strand at 333.775 kb on + strand at 333.780 kb on - strand at 333.782 kb on - strand at 333.827 kb on - strand at 333.827 kb on - strand at 333.830 kb on + strand at 333.873 kb on + strand at 333.941 kb on + strand at 333.942 kb on - strand at 333.942 kb on - strand at 334.022 kb on - strand at 334.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 331,965 + +0.8 331,965 + -0.3 331,965 + -1.3 331,966 - -0.8 331,966 - -0.5 331,966 - +0.1 331,971 + +0.4 331,972 - -1.0 331,972 - +0.0 332,152 + +0.5 332,152 + +1.0 332,152 + +1.4 332,152 + -1.0 332,152 + +0.6 332,152 + +0.5 332,152 + +0.7 332,152 + +0.0 332,152 + +0.0 332,153 - -0.3 332,153 - +0.0 332,223 + +0.0 332,223 + +0.6 332,223 + -0.1 332,297 + +0.8 332,297 + +0.0 332,298 - +0.3 332,305 + +1.0 332,305 + -2.1 332,306 - +1.0 332,536 - Pf1N1B4_5563 0.31 +0.5 332,536 - Pf1N1B4_5563 0.31 +0.0 332,536 - Pf1N1B4_5563 0.31 +0.0 332,619 - Pf1N1B4_5563 0.48 -1.0 332,619 - Pf1N1B4_5563 0.48 +1.0 332,619 - Pf1N1B4_5563 0.48 +1.0 332,649 - Pf1N1B4_5563 0.54 -1.0 332,667 + Pf1N1B4_5563 0.57 -0.6 332,667 + Pf1N1B4_5563 0.57 -1.4 332,667 + Pf1N1B4_5563 0.57 -0.8 332,668 - Pf1N1B4_5563 0.58 -1.0 332,668 - Pf1N1B4_5563 0.58 -0.3 332,682 + Pf1N1B4_5563 0.61 +0.0 332,682 + Pf1N1B4_5563 0.61 -1.0 332,682 + -1.0 332,682 + Pf1N1B4_5563 0.61 +0.9 332,686 + Pf1N1B4_5563 0.61 +0.2 332,686 + Pf1N1B4_5563 0.61 -1.0 332,687 - Pf1N1B4_5563 0.62 -2.4 332,722 + Pf1N1B4_5563 0.69 -1.6 332,722 + Pf1N1B4_5563 0.69 -1.0 332,722 + Pf1N1B4_5563 0.69 -1.1 332,722 + Pf1N1B4_5563 0.69 -0.5 332,723 - Pf1N1B4_5563 0.69 -0.8 332,875 + -0.3 332,876 - -0.2 332,876 - +1.0 332,938 + Pf1N1B4_5564 0.22 +0.0 332,938 + Pf1N1B4_5564 0.22 +0.6 332,938 + Pf1N1B4_5564 0.22 +1.0 332,938 + Pf1N1B4_5564 0.22 +0.4 332,938 + +0.0 332,938 + Pf1N1B4_5564 0.22 +0.2 332,938 + Pf1N1B4_5564 0.22 +1.0 333,006 + Pf1N1B4_5564 0.45 +1.4 333,007 - Pf1N1B4_5564 0.45 +0.9 333,007 - -0.6 333,017 + Pf1N1B4_5564 0.49 +0.8 333,017 + Pf1N1B4_5564 0.49 +1.0 333,018 - Pf1N1B4_5564 0.49 -0.2 333,061 + Pf1N1B4_5564 0.64 -0.3 333,061 + Pf1N1B4_5564 0.64 +0.3 333,062 - Pf1N1B4_5564 0.64 +1.0 333,062 - Pf1N1B4_5564 0.64 +0.4 333,092 - Pf1N1B4_5564 0.74 +0.4 333,139 + +2.6 333,139 + -0.1 333,139 + +1.4 333,139 + +0.3 333,140 - -0.3 333,140 - -1.1 333,140 - +1.4 333,140 - +0.1 333,273 + Pf1N1B4_5565 0.16 +0.4 333,273 + Pf1N1B4_5565 0.16 -2.4 333,291 - Pf1N1B4_5565 0.22 +0.0 333,372 + Pf1N1B4_5565 0.45 -1.2 333,372 + Pf1N1B4_5565 0.45 +0.1 333,372 + Pf1N1B4_5565 0.45 +0.5 333,372 + Pf1N1B4_5565 0.45 -0.1 333,373 - +0.0 333,459 + Pf1N1B4_5565 0.71 +1.0 333,459 + Pf1N1B4_5565 0.71 -0.8 333,459 + Pf1N1B4_5565 0.71 +1.0 333,466 + Pf1N1B4_5565 0.73 -1.6 333,466 + Pf1N1B4_5565 0.73 -2.1 333,466 + Pf1N1B4_5565 0.73 +0.0 333,466 + Pf1N1B4_5565 0.73 +0.4 333,467 - Pf1N1B4_5565 0.73 -0.7 333,467 - Pf1N1B4_5565 0.73 -0.8 333,478 + Pf1N1B4_5565 0.77 +1.8 333,478 + Pf1N1B4_5565 0.77 -0.4 333,510 + Pf1N1B4_5565 0.86 -0.6 333,510 + Pf1N1B4_5565 0.86 +1.4 333,510 + Pf1N1B4_5565 0.86 +0.7 333,510 + Pf1N1B4_5565 0.86 +1.0 333,510 + Pf1N1B4_5565 0.86 +1.0 333,510 + Pf1N1B4_5565 0.86 +0.7 333,511 - Pf1N1B4_5565 0.86 +1.5 333,511 - Pf1N1B4_5565 0.86 +0.4 333,542 + +0.7 333,633 + +1.4 333,633 + +2.0 333,633 + -0.3 333,633 + +0.4 333,634 - -1.3 333,634 - +0.3 333,634 - +1.6 333,674 - -1.8 333,703 - -0.1 333,703 - -0.6 333,736 + +0.2 333,737 - -0.6 333,737 - -0.7 333,762 + -2.0 333,768 + -1.1 333,768 + +1.5 333,769 - -1.8 333,775 + +0.4 333,775 + +1.0 333,780 - +0.0 333,782 - -0.6 333,827 - +0.2 333,827 - +0.1 333,830 + +0.7 333,873 + +1.0 333,941 + -0.6 333,942 - +1.1 333,942 - -0.4 334,022 - +1.2 334,022 - +0.4
Or see this region's nucleotide sequence