Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5284

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5282 and Pf1N1B4_5283 are separated by 47 nucleotidesPf1N1B4_5283 and Pf1N1B4_5284 are separated by 327 nucleotidesPf1N1B4_5284 and Pf1N1B4_5285 are separated by 936 nucleotides Pf1N1B4_5282 - Phage protein, at 36,363 to 36,533 _5282 Pf1N1B4_5283 - hypothetical protein, at 36,581 to 36,943 _5283 Pf1N1B4_5284 - hypothetical protein, at 37,271 to 37,441 _5284 Pf1N1B4_5285 - hypothetical protein, at 38,378 to 38,617 _5285 Position (kb) 37 38Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.341 kb on + strandat 36.342 kb on - strandat 36.342 kb on - strandat 36.342 kb on - strandat 36.342 kb on - strandat 36.389 kb on - strand, within Pf1N1B4_5282at 36.417 kb on + strand, within Pf1N1B4_5282at 36.417 kb on + strandat 36.417 kb on + strand, within Pf1N1B4_5282at 36.417 kb on + strand, within Pf1N1B4_5282at 36.446 kb on + strand, within Pf1N1B4_5282at 36.446 kb on + strand, within Pf1N1B4_5282at 36.446 kb on + strand, within Pf1N1B4_5282at 36.447 kb on - strand, within Pf1N1B4_5282at 36.447 kb on - strand, within Pf1N1B4_5282at 36.531 kb on + strandat 36.633 kb on - strandat 36.635 kb on + strand, within Pf1N1B4_5283at 36.635 kb on + strand, within Pf1N1B4_5283at 36.635 kb on + strand, within Pf1N1B4_5283at 36.635 kb on + strand, within Pf1N1B4_5283at 36.890 kb on - strand, within Pf1N1B4_5283at 36.941 kb on + strandat 36.941 kb on + strandat 36.942 kb on - strandat 36.942 kb on - strandat 36.960 kb on + strandat 36.961 kb on - strandat 37.001 kb on + strandat 37.001 kb on + strandat 37.001 kb on + strandat 37.052 kb on - strandat 37.079 kb on + strandat 37.080 kb on - strandat 37.080 kb on - strandat 37.170 kb on + strandat 37.171 kb on - strandat 37.198 kb on + strandat 37.199 kb on - strandat 37.201 kb on + strandat 37.201 kb on + strandat 37.201 kb on + strandat 37.202 kb on - strandat 37.202 kb on - strandat 37.202 kb on - strandat 37.202 kb on - strandat 37.248 kb on - strandat 37.295 kb on + strand, within Pf1N1B4_5284at 37.316 kb on + strand, within Pf1N1B4_5284at 37.356 kb on + strand, within Pf1N1B4_5284at 37.356 kb on + strand, within Pf1N1B4_5284at 37.357 kb on - strand, within Pf1N1B4_5284at 37.368 kb on + strand, within Pf1N1B4_5284at 37.369 kb on - strandat 37.369 kb on - strand, within Pf1N1B4_5284at 37.476 kb on - strandat 37.484 kb on - strandat 37.519 kb on - strandat 37.535 kb on + strandat 37.536 kb on - strandat 37.552 kb on + strandat 37.599 kb on + strandat 37.599 kb on + strandat 37.599 kb on + strandat 37.600 kb on - strandat 37.600 kb on - strandat 37.686 kb on + strandat 37.687 kb on - strandat 37.714 kb on - strandat 37.765 kb on + strandat 37.766 kb on - strandat 37.766 kb on - strandat 37.796 kb on + strandat 37.796 kb on + strandat 37.797 kb on - strandat 37.817 kb on + strandat 37.817 kb on + strandat 37.818 kb on - strandat 37.821 kb on + strandat 37.822 kb on - strandat 37.822 kb on - strandat 37.837 kb on + strandat 37.837 kb on + strandat 37.837 kb on + strandat 37.837 kb on + strandat 37.838 kb on - strandat 37.878 kb on + strandat 37.878 kb on + strandat 37.878 kb on + strandat 37.878 kb on + strandat 37.878 kb on + strandat 37.879 kb on - strandat 37.883 kb on + strandat 37.895 kb on + strandat 37.896 kb on - strandat 37.901 kb on + strandat 37.901 kb on + strandat 37.902 kb on - strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.903 kb on + strandat 37.904 kb on - strandat 37.904 kb on - strandat 37.904 kb on - strandat 37.904 kb on - strandat 37.904 kb on - strandat 37.904 kb on - strandat 37.938 kb on + strandat 37.938 kb on + strandat 37.938 kb on + strandat 37.938 kb on + strandat 37.984 kb on + strandat 37.984 kb on + strandat 38.056 kb on + strandat 38.163 kb on + strandat 38.163 kb on + strandat 38.163 kb on + strandat 38.163 kb on + strandat 38.164 kb on - strandat 38.164 kb on - strandat 38.167 kb on + strandat 38.167 kb on + strandat 38.168 kb on - strandat 38.168 kb on - strandat 38.208 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.221 kb on + strandat 38.222 kb on - strandat 38.222 kb on - strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.223 kb on + strandat 38.224 kb on - strandat 38.224 kb on - strandat 38.224 kb on - strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.227 kb on + strandat 38.228 kb on - strandat 38.239 kb on + strandat 38.279 kb on + strandat 38.279 kb on + strandat 38.279 kb on + strandat 38.279 kb on + strandat 38.279 kb on + strandat 38.279 kb on + strandat 38.279 kb on + strandat 38.280 kb on - strandat 38.290 kb on + strandat 38.290 kb on + strandat 38.290 kb on + strandat 38.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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36,341 + +0.1
36,341 + +0.0
36,341 + +0.3
36,341 + +1.4
36,341 + -1.2
36,341 + -0.8
36,341 + -0.4
36,342 - +2.0
36,342 - -0.9
36,342 - -0.8
36,342 - +0.0
36,389 - Pf1N1B4_5282 0.15 +1.0
36,417 + Pf1N1B4_5282 0.32 -0.8
36,417 + +1.0
36,417 + Pf1N1B4_5282 0.32 +1.0
36,417 + Pf1N1B4_5282 0.32 +2.0
36,446 + Pf1N1B4_5282 0.49 +0.0
36,446 + Pf1N1B4_5282 0.49 -0.5
36,446 + Pf1N1B4_5282 0.49 -1.6
36,447 - Pf1N1B4_5282 0.49 -1.3
36,447 - Pf1N1B4_5282 0.49 +0.4
36,531 + +0.0
36,633 - +0.4
36,635 + Pf1N1B4_5283 0.15 -1.3
36,635 + Pf1N1B4_5283 0.15 +0.2
36,635 + Pf1N1B4_5283 0.15 +0.5
36,635 + Pf1N1B4_5283 0.15 -0.2
36,890 - Pf1N1B4_5283 0.85 -1.3
36,941 + +0.0
36,941 + +0.0
36,942 - +0.3
36,942 - -1.3
36,960 + +0.3
36,961 - +0.5
37,001 + +0.7
37,001 + -1.0
37,001 + -0.6
37,052 - -0.4
37,079 + +0.0
37,080 - +0.3
37,080 - -1.0
37,170 + +0.3
37,171 - +1.0
37,198 + -1.0
37,199 - -0.1
37,201 + +0.0
37,201 + +1.0
37,201 + -1.0
37,202 - +0.0
37,202 - -0.2
37,202 - +1.0
37,202 - +0.5
37,248 - +0.6
37,295 + Pf1N1B4_5284 0.14 -1.2
37,316 + Pf1N1B4_5284 0.26 +0.0
37,356 + Pf1N1B4_5284 0.50 -1.1
37,356 + Pf1N1B4_5284 0.50 -1.3
37,357 - Pf1N1B4_5284 0.50 -0.8
37,368 + Pf1N1B4_5284 0.57 -0.1
37,369 - +0.0
37,369 - Pf1N1B4_5284 0.57 +0.0
37,476 - +0.6
37,484 - +0.1
37,519 - -0.2
37,535 + +1.0
37,536 - -1.2
37,552 + +0.0
37,599 + -0.4
37,599 + -0.4
37,599 + -0.6
37,600 - +1.4
37,600 - +0.4
37,686 + +1.3
37,687 - +1.0
37,714 - -1.3
37,765 + -0.9
37,766 - +1.7
37,766 - -0.1
37,796 + +0.3
37,796 + -0.3
37,797 - +0.3
37,817 + -0.5
37,817 + -0.6
37,818 - -1.0
37,821 + -1.4
37,822 - +0.0
37,822 - +0.0
37,837 + -1.3
37,837 + +1.0
37,837 + -1.8
37,837 + +2.3
37,838 - +1.6
37,878 + -0.1
37,878 + -0.9
37,878 + -0.6
37,878 + +0.4
37,878 + +0.0
37,879 - -0.6
37,883 + +0.3
37,895 + -1.6
37,896 - -1.5
37,901 + -1.3
37,901 + -1.4
37,902 - -1.2
37,903 + +0.0
37,903 + -0.7
37,903 + +0.0
37,903 + +0.2
37,903 + -0.6
37,903 + +0.4
37,903 + -1.8
37,903 + -0.1
37,903 + -0.6
37,903 + -0.5
37,903 + -0.8
37,903 + -0.3
37,903 + -2.0
37,903 + +0.3
37,903 + -0.3
37,903 + +0.4
37,904 - +3.0
37,904 - -0.6
37,904 - +0.5
37,904 - +0.5
37,904 - -0.8
37,904 - +1.3
37,938 + +1.0
37,938 + +2.0
37,938 + -1.3
37,938 + +0.0
37,984 + +0.2
37,984 + +0.0
38,056 + +0.4
38,163 + -0.6
38,163 + +0.0
38,163 + +0.0
38,163 + +1.0
38,164 - -0.3
38,164 - +0.4
38,167 + +0.8
38,167 + -0.4
38,168 - -0.1
38,168 - +0.1
38,208 + -1.0
38,221 + +1.4
38,221 + -0.9
38,221 + +2.6
38,221 + +1.0
38,221 + -1.2
38,221 + +0.2
38,221 + +0.7
38,221 + +0.2
38,222 - +1.6
38,222 - +0.2
38,223 + +0.3
38,223 + -0.3
38,223 + -0.6
38,223 + +0.0
38,223 + -1.0
38,223 + -1.2
38,223 + +0.6
38,223 + -2.3
38,223 + +0.3
38,223 + -0.3
38,223 + -1.0
38,223 + +0.3
38,223 + -0.4
38,223 + -0.7
38,224 - +1.6
38,224 - +1.4
38,224 - -1.6
38,227 + +0.5
38,227 + +0.2
38,227 + -0.3
38,227 + +0.4
38,227 + -0.7
38,227 + -1.0
38,227 + -1.0
38,227 + -0.8
38,228 - -0.2
38,239 + +0.7
38,279 + +1.9
38,279 + -0.7
38,279 + -0.4
38,279 + +0.1
38,279 + +0.1
38,279 + +0.3
38,279 + -1.2
38,280 - +0.3
38,290 + -0.2
38,290 + -0.6
38,290 + +0.0
38,291 - +0.5

Or see this region's nucleotide sequence