Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5249

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5249 and Pf1N1B4_5250 are separated by 353 nucleotides Pf1N1B4_5249 - Outer membrane protein A precursor, at 7,856 to 8,512 _5249 Pf1N1B4_5250 - hypothetical protein, at 8,866 to 8,994 _5250 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.871 kb on - strandat 6.871 kb on - strandat 6.871 kb on - strandat 6.882 kb on - strandat 6.882 kb on - strandat 6.887 kb on + strandat 6.888 kb on - strandat 6.888 kb on - strandat 6.888 kb on - strandat 6.888 kb on - strandat 6.908 kb on + strandat 6.908 kb on + strandat 6.908 kb on + strandat 6.909 kb on - strandat 6.928 kb on + strandat 6.928 kb on + strandat 6.929 kb on - strandat 6.929 kb on - strandat 6.929 kb on - strandat 6.944 kb on - strandat 7.000 kb on - strandat 7.018 kb on + strandat 7.019 kb on - strandat 7.034 kb on + strandat 7.035 kb on - strandat 7.137 kb on + strandat 7.137 kb on + strandat 7.139 kb on + strandat 7.139 kb on + strandat 7.139 kb on + strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.140 kb on - strandat 7.406 kb on + strandat 7.442 kb on + strandat 7.443 kb on - strandat 7.563 kb on - strandat 7.569 kb on + strandat 7.663 kb on + strandat 7.684 kb on + strandat 7.684 kb on + strandat 7.685 kb on - strandat 7.810 kb on + strandat 7.857 kb on + strandat 7.926 kb on - strand, within Pf1N1B4_5249at 7.986 kb on + strand, within Pf1N1B4_5249at 7.993 kb on - strand, within Pf1N1B4_5249at 8.219 kb on + strand, within Pf1N1B4_5249at 8.219 kb on + strand, within Pf1N1B4_5249at 8.220 kb on - strand, within Pf1N1B4_5249at 8.220 kb on - strand, within Pf1N1B4_5249at 8.220 kb on - strand, within Pf1N1B4_5249at 8.228 kb on - strand, within Pf1N1B4_5249at 8.289 kb on - strand, within Pf1N1B4_5249at 8.343 kb on + strand, within Pf1N1B4_5249at 8.428 kb on - strand, within Pf1N1B4_5249at 8.594 kb on + strandat 8.595 kb on - strandat 8.595 kb on - strandat 8.642 kb on + strandat 8.643 kb on - strandat 8.654 kb on + strandat 8.655 kb on - strandat 8.659 kb on - strandat 8.659 kb on - strandat 8.659 kb on - strandat 8.659 kb on - strandat 8.659 kb on - strandat 8.676 kb on - strandat 8.761 kb on + strandat 8.761 kb on + strandat 8.814 kb on + strandat 8.818 kb on + strandat 8.819 kb on - strandat 8.819 kb on - strandat 9.008 kb on - strandat 9.074 kb on + strandat 9.074 kb on + strandat 9.075 kb on - strandat 9.406 kb on + strandat 9.406 kb on + strandat 9.406 kb on + strandat 9.406 kb on + strandat 9.406 kb on + strandat 9.407 kb on - strandat 9.407 kb on - strandat 9.407 kb on - strandat 9.407 kb on - strandat 9.410 kb on + strandat 9.410 kb on + strandat 9.411 kb on - strandat 9.411 kb on - strandat 9.417 kb on + strandat 9.417 kb on + strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.418 kb on - strandat 9.422 kb on - strandat 9.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,871 - -0.6
6,871 - -0.3
6,871 - +0.0
6,882 - -0.3
6,882 - +0.0
6,887 + +1.0
6,888 - -0.3
6,888 - -1.0
6,888 - +0.6
6,888 - +0.2
6,908 + -0.2
6,908 + -2.2
6,908 + -1.3
6,909 - -0.1
6,928 + +0.0
6,928 + +0.7
6,929 - +1.3
6,929 - +1.8
6,929 - -0.6
6,944 - -0.2
7,000 - -0.9
7,018 + +2.0
7,019 - -2.4
7,034 + -1.2
7,035 - +1.0
7,137 + -0.3
7,137 + -1.6
7,139 + +0.6
7,139 + +0.3
7,139 + +1.0
7,140 - +0.0
7,140 - -1.6
7,140 - -0.1
7,140 - -1.2
7,140 - +2.2
7,140 - +0.0
7,140 - +0.0
7,140 - +2.0
7,140 - -0.4
7,406 + -0.2
7,442 + +0.4
7,443 - -0.6
7,563 - -0.1
7,569 + +0.2
7,663 + +0.2
7,684 + +0.1
7,684 + +0.3
7,685 - +0.5
7,810 + +1.0
7,857 + -0.4
7,926 - Pf1N1B4_5249 0.11 +0.4
7,986 + Pf1N1B4_5249 0.20 +1.6
7,993 - Pf1N1B4_5249 0.21 -0.2
8,219 + Pf1N1B4_5249 0.55 +0.4
8,219 + Pf1N1B4_5249 0.55 +0.4
8,220 - Pf1N1B4_5249 0.55 +0.6
8,220 - Pf1N1B4_5249 0.55 -0.6
8,220 - Pf1N1B4_5249 0.55 +1.0
8,228 - Pf1N1B4_5249 0.57 -0.3
8,289 - Pf1N1B4_5249 0.66 +1.0
8,343 + Pf1N1B4_5249 0.74 -0.8
8,428 - Pf1N1B4_5249 0.87 +0.5
8,594 + -0.8
8,595 - -0.2
8,595 - +0.5
8,642 + +1.6
8,643 - +2.0
8,654 + +0.0
8,655 - +0.4
8,659 - +1.0
8,659 - +0.4
8,659 - -0.6
8,659 - +0.0
8,659 - +1.4
8,676 - -0.6
8,761 + -0.3
8,761 + +0.0
8,814 + +1.6
8,818 + -1.0
8,819 - +1.6
8,819 - +0.4
9,008 - +1.4
9,074 + -0.7
9,074 + -1.6
9,075 - -0.6
9,406 + +0.6
9,406 + +1.6
9,406 + -0.2
9,406 + -1.6
9,406 + -0.2
9,407 - +0.4
9,407 - -0.5
9,407 - +0.3
9,407 - -1.0
9,410 + -0.2
9,410 + -1.3
9,411 - +1.8
9,411 - +0.3
9,417 + -0.1
9,417 + +0.3
9,418 - -0.1
9,418 - +0.4
9,418 - +0.2
9,418 - +0.2
9,418 - -1.0
9,418 - +0.4
9,418 - -1.3
9,418 - -0.7
9,418 - +0.7
9,418 - +0.8
9,418 - -0.5
9,422 - -0.4
9,422 - -1.4

Or see this region's nucleotide sequence