Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4713 and Pf1N1B4_4714 overlap by 47 nucleotides Pf1N1B4_4714 and Pf1N1B4_4715 are separated by 175 nucleotides Pf1N1B4_4715 and Pf1N1B4_4716 are separated by 101 nucleotides
Pf1N1B4_4713 - Xanthine permease, at 5,210,008 to 5,211,483
_4713
Pf1N1B4_4714 - hypothetical protein, at 5,211,437 to 5,211,553
_4714
Pf1N1B4_4715 - Transcriptional regulator, at 5,211,729 to 5,212,622
_4715
Pf1N1B4_4716 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 5,212,724 to 5,213,815
_4716
Position (kb)
5211
5212
5213 Strain fitness (log2 ratio)
-1
0
1 at 5211.299 kb on + strand, within Pf1N1B4_4713 at 5211.376 kb on + strand at 5211.376 kb on + strand at 5211.377 kb on - strand at 5211.377 kb on - strand at 5211.562 kb on + strand at 5211.563 kb on - strand at 5211.563 kb on - strand at 5211.563 kb on - strand at 5211.727 kb on - strand at 5211.727 kb on - strand at 5211.727 kb on - strand at 5212.091 kb on - strand, within Pf1N1B4_4715 at 5212.154 kb on - strand, within Pf1N1B4_4715 at 5212.154 kb on - strand, within Pf1N1B4_4715 at 5212.652 kb on - strand at 5212.811 kb on + strand at 5212.812 kb on - strand at 5212.883 kb on + strand at 5213.105 kb on + strand, within Pf1N1B4_4716 at 5213.105 kb on + strand, within Pf1N1B4_4716 at 5213.207 kb on + strand, within Pf1N1B4_4716 at 5213.282 kb on + strand, within Pf1N1B4_4716 at 5213.283 kb on - strand, within Pf1N1B4_4716 at 5213.352 kb on + strand, within Pf1N1B4_4716 at 5213.432 kb on + strand, within Pf1N1B4_4716
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,211,299 + Pf1N1B4_4713 0.87 -0.1 5,211,376 + -0.1 5,211,376 + -1.4 5,211,377 - +0.4 5,211,377 - -1.2 5,211,562 + -0.6 5,211,563 - +1.4 5,211,563 - -1.2 5,211,563 - +1.7 5,211,727 - +1.0 5,211,727 - +1.6 5,211,727 - +0.8 5,212,091 - Pf1N1B4_4715 0.40 -0.6 5,212,154 - Pf1N1B4_4715 0.48 +0.4 5,212,154 - Pf1N1B4_4715 0.48 -1.0 5,212,652 - +1.0 5,212,811 + -0.9 5,212,812 - +0.9 5,212,883 + -0.6 5,213,105 + Pf1N1B4_4716 0.35 -0.0 5,213,105 + Pf1N1B4_4716 0.35 -0.2 5,213,207 + Pf1N1B4_4716 0.44 +0.4 5,213,282 + Pf1N1B4_4716 0.51 +1.4 5,213,283 - Pf1N1B4_4716 0.51 +0.1 5,213,352 + Pf1N1B4_4716 0.58 -0.3 5,213,432 + Pf1N1B4_4716 0.65 -0.2
Or see this region's nucleotide sequence