Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4688 and Pf1N1B4_4689 are separated by 13 nucleotides Pf1N1B4_4689 and Pf1N1B4_4690 are separated by 221 nucleotides Pf1N1B4_4690 and Pf1N1B4_4691 overlap by 1 nucleotides
Pf1N1B4_4688 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 5,180,534 to 5,181,487
_4688
Pf1N1B4_4689 - hydrolase, alpha/beta fold family, at 5,181,501 to 5,182,544
_4689
Pf1N1B4_4690 - probable membrane protein YPO3302, at 5,182,766 to 5,183,200
_4690
Pf1N1B4_4691 - CopG protein, at 5,183,200 to 5,183,646
_4691
Position (kb) 5181
5182
5183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5180.536 kb on - strand at 5180.610 kb on + strand at 5180.611 kb on - strand at 5180.705 kb on + strand, within Pf1N1B4_4688 at 5180.706 kb on - strand, within Pf1N1B4_4688 at 5180.919 kb on + strand, within Pf1N1B4_4688 at 5180.919 kb on + strand, within Pf1N1B4_4688 at 5180.919 kb on + strand, within Pf1N1B4_4688 at 5180.919 kb on + strand, within Pf1N1B4_4688 at 5180.920 kb on - strand, within Pf1N1B4_4688 at 5180.920 kb on - strand, within Pf1N1B4_4688 at 5180.920 kb on - strand, within Pf1N1B4_4688 at 5181.177 kb on + strand, within Pf1N1B4_4688 at 5181.177 kb on + strand, within Pf1N1B4_4688 at 5181.178 kb on - strand, within Pf1N1B4_4688 at 5181.178 kb on - strand, within Pf1N1B4_4688 at 5181.494 kb on + strand at 5181.494 kb on + strand at 5181.495 kb on - strand at 5181.495 kb on - strand at 5181.645 kb on + strand, within Pf1N1B4_4689 at 5181.645 kb on + strand, within Pf1N1B4_4689 at 5181.645 kb on + strand, within Pf1N1B4_4689 at 5181.646 kb on - strand, within Pf1N1B4_4689 at 5181.652 kb on + strand, within Pf1N1B4_4689 at 5181.653 kb on - strand, within Pf1N1B4_4689 at 5181.763 kb on + strand at 5181.766 kb on + strand, within Pf1N1B4_4689 at 5181.767 kb on - strand, within Pf1N1B4_4689 at 5181.854 kb on - strand at 5181.898 kb on + strand, within Pf1N1B4_4689 at 5181.899 kb on - strand, within Pf1N1B4_4689 at 5181.899 kb on - strand, within Pf1N1B4_4689 at 5181.899 kb on - strand, within Pf1N1B4_4689 at 5181.901 kb on + strand, within Pf1N1B4_4689 at 5181.901 kb on + strand at 5181.901 kb on + strand, within Pf1N1B4_4689 at 5181.902 kb on - strand, within Pf1N1B4_4689 at 5181.902 kb on - strand, within Pf1N1B4_4689 at 5181.902 kb on - strand at 5181.902 kb on - strand, within Pf1N1B4_4689 at 5181.902 kb on - strand, within Pf1N1B4_4689 at 5181.902 kb on - strand, within Pf1N1B4_4689 at 5181.902 kb on - strand, within Pf1N1B4_4689 at 5181.958 kb on + strand, within Pf1N1B4_4689 at 5181.980 kb on - strand, within Pf1N1B4_4689 at 5182.055 kb on - strand, within Pf1N1B4_4689 at 5182.174 kb on + strand, within Pf1N1B4_4689 at 5182.354 kb on + strand, within Pf1N1B4_4689 at 5182.396 kb on + strand, within Pf1N1B4_4689 at 5182.397 kb on - strand, within Pf1N1B4_4689 at 5182.397 kb on - strand at 5182.397 kb on - strand, within Pf1N1B4_4689 at 5182.408 kb on + strand, within Pf1N1B4_4689 at 5182.601 kb on + strand at 5182.607 kb on + strand at 5182.607 kb on + strand at 5182.607 kb on + strand at 5182.608 kb on - strand at 5182.786 kb on + strand at 5182.917 kb on - strand, within Pf1N1B4_4690 at 5183.188 kb on - strand at 5183.264 kb on + strand, within Pf1N1B4_4691 at 5183.362 kb on + strand, within Pf1N1B4_4691 at 5183.362 kb on + strand, within Pf1N1B4_4691 at 5183.363 kb on - strand, within Pf1N1B4_4691 at 5183.406 kb on + strand, within Pf1N1B4_4691 at 5183.483 kb on + strand, within Pf1N1B4_4691 at 5183.484 kb on - strand, within Pf1N1B4_4691 at 5183.484 kb on - strand, within Pf1N1B4_4691 at 5183.484 kb on - strand, within Pf1N1B4_4691
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,180,536 - -0.2 5,180,610 + +1.0 5,180,611 - -1.2 5,180,705 + Pf1N1B4_4688 0.18 -2.2 5,180,706 - Pf1N1B4_4688 0.18 +0.2 5,180,919 + Pf1N1B4_4688 0.40 -0.3 5,180,919 + Pf1N1B4_4688 0.40 -0.6 5,180,919 + Pf1N1B4_4688 0.40 -0.4 5,180,919 + Pf1N1B4_4688 0.40 -0.3 5,180,920 - Pf1N1B4_4688 0.40 +2.4 5,180,920 - Pf1N1B4_4688 0.40 -1.0 5,180,920 - Pf1N1B4_4688 0.40 -2.4 5,181,177 + Pf1N1B4_4688 0.67 -1.6 5,181,177 + Pf1N1B4_4688 0.67 +3.0 5,181,178 - Pf1N1B4_4688 0.68 -0.8 5,181,178 - Pf1N1B4_4688 0.68 -1.4 5,181,494 + +1.4 5,181,494 + -1.2 5,181,495 - -1.2 5,181,495 - +0.4 5,181,645 + Pf1N1B4_4689 0.14 +1.0 5,181,645 + Pf1N1B4_4689 0.14 +0.2 5,181,645 + Pf1N1B4_4689 0.14 -0.3 5,181,646 - Pf1N1B4_4689 0.14 -0.3 5,181,652 + Pf1N1B4_4689 0.14 +1.0 5,181,653 - Pf1N1B4_4689 0.15 +1.4 5,181,763 + +1.7 5,181,766 + Pf1N1B4_4689 0.25 +1.4 5,181,767 - Pf1N1B4_4689 0.25 -0.4 5,181,854 - +0.4 5,181,898 + Pf1N1B4_4689 0.38 -0.9 5,181,899 - Pf1N1B4_4689 0.38 +0.2 5,181,899 - Pf1N1B4_4689 0.38 +0.4 5,181,899 - Pf1N1B4_4689 0.38 -0.2 5,181,901 + Pf1N1B4_4689 0.38 -0.2 5,181,901 + +0.1 5,181,901 + Pf1N1B4_4689 0.38 -0.3 5,181,902 - Pf1N1B4_4689 0.38 -0.1 5,181,902 - Pf1N1B4_4689 0.38 +0.1 5,181,902 - +1.4 5,181,902 - Pf1N1B4_4689 0.38 +1.0 5,181,902 - Pf1N1B4_4689 0.38 -1.0 5,181,902 - Pf1N1B4_4689 0.38 +0.4 5,181,902 - Pf1N1B4_4689 0.38 -0.9 5,181,958 + Pf1N1B4_4689 0.44 +1.2 5,181,980 - Pf1N1B4_4689 0.46 -0.2 5,182,055 - Pf1N1B4_4689 0.53 -0.1 5,182,174 + Pf1N1B4_4689 0.64 -2.8 5,182,354 + Pf1N1B4_4689 0.82 +0.4 5,182,396 + Pf1N1B4_4689 0.86 +0.3 5,182,397 - Pf1N1B4_4689 0.86 +0.5 5,182,397 - +0.7 5,182,397 - Pf1N1B4_4689 0.86 +0.8 5,182,408 + Pf1N1B4_4689 0.87 +0.4 5,182,601 + +0.0 5,182,607 + +2.0 5,182,607 + +0.8 5,182,607 + +2.0 5,182,608 - -1.3 5,182,786 + -0.7 5,182,917 - Pf1N1B4_4690 0.35 +1.0 5,183,188 - +1.4 5,183,264 + Pf1N1B4_4691 0.14 -0.3 5,183,362 + Pf1N1B4_4691 0.36 -0.6 5,183,362 + Pf1N1B4_4691 0.36 +0.4 5,183,363 - Pf1N1B4_4691 0.36 -0.6 5,183,406 + Pf1N1B4_4691 0.46 +1.0 5,183,483 + Pf1N1B4_4691 0.63 +0.8 5,183,484 - Pf1N1B4_4691 0.64 -0.3 5,183,484 - Pf1N1B4_4691 0.64 -1.2 5,183,484 - Pf1N1B4_4691 0.64 +0.0
Or see this region's nucleotide sequence