Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4605 and Pf1N1B4_4606 are separated by 125 nucleotides Pf1N1B4_4606 and Pf1N1B4_4607 are separated by 22 nucleotides Pf1N1B4_4607 and Pf1N1B4_4608 overlap by 25 nucleotides Pf1N1B4_4608 and Pf1N1B4_4609 overlap by 1 nucleotides
Pf1N1B4_4605 - FIG00953564: hypothetical protein, at 5,077,968 to 5,078,918
_4605
Pf1N1B4_4606 - NAD kinase (EC 2.7.1.23), at 5,079,044 to 5,079,364
_4606
Pf1N1B4_4607 - NAD kinase (EC 2.7.1.23), at 5,079,387 to 5,079,728
_4607
Pf1N1B4_4608 - NAD kinase (EC 2.7.1.23), at 5,079,704 to 5,079,934
_4608
Pf1N1B4_4609 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases, at 5,079,934 to 5,080,398
_4609
Position (kb)
5079
5080 Strain fitness (log2 ratio)
-1
0
1 at 5078.315 kb on - strand at 5078.665 kb on + strand, within Pf1N1B4_4605 at 5078.665 kb on + strand at 5078.665 kb on + strand, within Pf1N1B4_4605 at 5078.668 kb on + strand, within Pf1N1B4_4605 at 5078.719 kb on + strand, within Pf1N1B4_4605 at 5078.720 kb on - strand, within Pf1N1B4_4605 at 5078.890 kb on - strand at 5078.910 kb on + strand at 5078.911 kb on - strand at 5079.951 kb on + strand at 5079.956 kb on - strand at 5080.243 kb on - strand, within Pf1N1B4_4609 at 5080.329 kb on + strand, within Pf1N1B4_4609
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,078,315 - +0.5 5,078,665 + Pf1N1B4_4605 0.73 -0.1 5,078,665 + +0.5 5,078,665 + Pf1N1B4_4605 0.73 -1.1 5,078,668 + Pf1N1B4_4605 0.74 +0.7 5,078,719 + Pf1N1B4_4605 0.79 +0.5 5,078,720 - Pf1N1B4_4605 0.79 +0.7 5,078,890 - +0.5 5,078,910 + -0.7 5,078,911 - -1.1 5,079,951 + +0.0 5,079,956 - -0.7 5,080,243 - Pf1N1B4_4609 0.66 +0.5 5,080,329 + Pf1N1B4_4609 0.85 -0.1
Or see this region's nucleotide sequence