Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4385 and Pf1N1B4_4386 are separated by 156 nucleotides Pf1N1B4_4386 and Pf1N1B4_4387 are separated by 162 nucleotides Pf1N1B4_4387 and Pf1N1B4_4388 overlap by 4 nucleotides
Pf1N1B4_4385 - Gfa-like protein, at 4,844,117 to 4,844,359
_4385
Pf1N1B4_4386 - Inositol transport system sugar-binding protein, at 4,844,516 to 4,845,442
_4386
Pf1N1B4_4387 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 4,845,605 to 4,846,393
_4387
Pf1N1B4_4388 - Myo-inositol 2-dehydrogenase (EC 1.1.1.18), at 4,846,390 to 4,847,412
_4388
Position (kb)
4844
4845
4846 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4843.536 kb on - strand at 4843.562 kb on - strand at 4843.615 kb on - strand at 4843.852 kb on - strand at 4843.852 kb on - strand at 4844.254 kb on + strand at 4844.254 kb on + strand, within Pf1N1B4_4385 at 4844.254 kb on + strand, within Pf1N1B4_4385 at 4844.255 kb on - strand, within Pf1N1B4_4385 at 4844.255 kb on - strand, within Pf1N1B4_4385 at 4844.255 kb on - strand at 4844.255 kb on - strand, within Pf1N1B4_4385 at 4844.255 kb on - strand, within Pf1N1B4_4385 at 4844.258 kb on + strand, within Pf1N1B4_4385 at 4844.258 kb on + strand at 4844.357 kb on + strand at 4844.358 kb on - strand at 4844.368 kb on + strand at 4844.368 kb on + strand at 4844.369 kb on - strand at 4844.369 kb on - strand at 4844.369 kb on - strand at 4844.402 kb on + strand at 4844.402 kb on + strand at 4844.402 kb on + strand at 4844.402 kb on + strand at 4844.517 kb on + strand at 4844.518 kb on - strand at 4844.518 kb on - strand at 4844.522 kb on - strand at 4844.522 kb on - strand at 4844.524 kb on - strand at 4844.524 kb on - strand at 4844.524 kb on - strand at 4845.327 kb on + strand at 4845.327 kb on + strand, within Pf1N1B4_4386 at 4845.327 kb on + strand at 4845.327 kb on + strand, within Pf1N1B4_4386 at 4845.327 kb on + strand at 4845.327 kb on + strand, within Pf1N1B4_4386 at 4845.327 kb on + strand, within Pf1N1B4_4386 at 4845.328 kb on - strand, within Pf1N1B4_4386 at 4845.328 kb on - strand, within Pf1N1B4_4386 at 4845.328 kb on - strand, within Pf1N1B4_4386 at 4845.408 kb on - strand at 4845.463 kb on + strand at 4845.510 kb on + strand at 4845.511 kb on - strand at 4845.541 kb on - strand at 4845.570 kb on + strand at 4845.571 kb on - strand at 4845.571 kb on - strand at 4845.956 kb on - strand, within Pf1N1B4_4387
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,843,536 - -0.1 4,843,562 - +0.3 4,843,615 - +0.6 4,843,852 - -0.0 4,843,852 - -0.2 4,844,254 + +2.1 4,844,254 + Pf1N1B4_4385 0.56 -0.4 4,844,254 + Pf1N1B4_4385 0.56 -0.8 4,844,255 - Pf1N1B4_4385 0.57 +0.6 4,844,255 - Pf1N1B4_4385 0.57 -0.6 4,844,255 - +0.6 4,844,255 - Pf1N1B4_4385 0.57 -0.8 4,844,255 - Pf1N1B4_4385 0.57 -0.2 4,844,258 + Pf1N1B4_4385 0.58 -1.0 4,844,258 + -1.4 4,844,357 + -1.9 4,844,358 - -0.4 4,844,368 + +0.4 4,844,368 + -0.4 4,844,369 - +0.2 4,844,369 - +0.5 4,844,369 - -0.1 4,844,402 + -0.3 4,844,402 + +0.1 4,844,402 + -1.0 4,844,402 + +0.6 4,844,517 + +0.0 4,844,518 - -0.4 4,844,518 - +0.6 4,844,522 - -0.4 4,844,522 - +1.0 4,844,524 - +0.6 4,844,524 - -1.0 4,844,524 - -0.0 4,845,327 + -0.4 4,845,327 + Pf1N1B4_4386 0.87 -1.4 4,845,327 + -0.4 4,845,327 + Pf1N1B4_4386 0.87 -0.2 4,845,327 + +0.6 4,845,327 + Pf1N1B4_4386 0.87 -2.3 4,845,327 + Pf1N1B4_4386 0.87 +1.6 4,845,328 - Pf1N1B4_4386 0.88 -1.3 4,845,328 - Pf1N1B4_4386 0.88 +2.1 4,845,328 - Pf1N1B4_4386 0.88 -2.4 4,845,408 - +0.1 4,845,463 + +1.1 4,845,510 + -0.3 4,845,511 - +0.6 4,845,541 - -0.4 4,845,570 + +0.6 4,845,571 - -0.0 4,845,571 - -1.0 4,845,956 - Pf1N1B4_4387 0.44 -0.6
Or see this region's nucleotide sequence