Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3741 and Pf1N1B4_3742 are separated by 105 nucleotides Pf1N1B4_3742 and Pf1N1B4_3743 are separated by 168 nucleotides Pf1N1B4_3743 and Pf1N1B4_3744 are separated by 112 nucleotides
Pf1N1B4_3741 - Periplasmic protease, at 4,151,576 to 4,153,690
_3741
Pf1N1B4_3742 - Oxidoreductase, zinc-binding, at 4,153,796 to 4,154,758
_3742
Pf1N1B4_3743 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,154,927 to 4,155,580
_3743
Pf1N1B4_3744 - ABC transporter, ATP-binding protein, at 4,155,693 to 4,156,682
_3744
Position (kb)
4153
4154
4155 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4153.852 kb on + strand at 4153.852 kb on + strand at 4153.852 kb on + strand at 4153.853 kb on - strand at 4153.853 kb on - strand at 4153.864 kb on - strand at 4153.962 kb on + strand, within Pf1N1B4_3742 at 4154.073 kb on + strand, within Pf1N1B4_3742 at 4154.073 kb on + strand, within Pf1N1B4_3742 at 4154.074 kb on - strand, within Pf1N1B4_3742 at 4154.521 kb on - strand, within Pf1N1B4_3742 at 4154.710 kb on + strand at 4154.710 kb on + strand at 4154.710 kb on + strand at 4154.929 kb on - strand at 4155.052 kb on - strand, within Pf1N1B4_3743 at 4155.126 kb on + strand, within Pf1N1B4_3743 at 4155.146 kb on - strand, within Pf1N1B4_3743 at 4155.411 kb on + strand at 4155.411 kb on + strand, within Pf1N1B4_3743 at 4155.411 kb on + strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.412 kb on - strand, within Pf1N1B4_3743 at 4155.441 kb on + strand at 4155.441 kb on + strand, within Pf1N1B4_3743 at 4155.442 kb on - strand, within Pf1N1B4_3743 at 4155.442 kb on - strand, within Pf1N1B4_3743 at 4155.655 kb on - strand at 4155.655 kb on - strand at 4155.677 kb on + strand at 4155.678 kb on - strand at 4155.678 kb on - strand at 4155.678 kb on - strand at 4155.678 kb on - strand at 4155.678 kb on - strand at 4155.678 kb on - strand at 4155.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,153,852 + +0.4 4,153,852 + -0.2 4,153,852 + -0.2 4,153,853 - +3.1 4,153,853 - +0.8 4,153,864 - -0.2 4,153,962 + Pf1N1B4_3742 0.17 -2.2 4,154,073 + Pf1N1B4_3742 0.29 -1.5 4,154,073 + Pf1N1B4_3742 0.29 +0.2 4,154,074 - Pf1N1B4_3742 0.29 -0.2 4,154,521 - Pf1N1B4_3742 0.75 -1.6 4,154,710 + -0.3 4,154,710 + -0.2 4,154,710 + -1.5 4,154,929 - -0.9 4,155,052 - Pf1N1B4_3743 0.19 -0.2 4,155,126 + Pf1N1B4_3743 0.30 -0.2 4,155,146 - Pf1N1B4_3743 0.33 -1.4 4,155,411 + +0.8 4,155,411 + Pf1N1B4_3743 0.74 -1.2 4,155,411 + Pf1N1B4_3743 0.74 +0.5 4,155,412 - Pf1N1B4_3743 0.74 -0.8 4,155,412 - Pf1N1B4_3743 0.74 -0.1 4,155,412 - Pf1N1B4_3743 0.74 -0.1 4,155,412 - Pf1N1B4_3743 0.74 -0.2 4,155,412 - Pf1N1B4_3743 0.74 +1.5 4,155,412 - -1.5 4,155,412 - Pf1N1B4_3743 0.74 +1.4 4,155,412 - Pf1N1B4_3743 0.74 -0.3 4,155,412 - Pf1N1B4_3743 0.74 +0.2 4,155,441 + +1.8 4,155,441 + Pf1N1B4_3743 0.79 -0.9 4,155,442 - Pf1N1B4_3743 0.79 +0.4 4,155,442 - Pf1N1B4_3743 0.79 +0.3 4,155,655 - -1.9 4,155,655 - +0.3 4,155,677 + +0.8 4,155,678 - +0.2 4,155,678 - +0.1 4,155,678 - -0.8 4,155,678 - +1.1 4,155,678 - +0.2 4,155,678 - -1.0 4,155,678 - -1.2
Or see this region's nucleotide sequence