Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3720 and Pf1N1B4_3721 are separated by 146 nucleotides Pf1N1B4_3721 and Pf1N1B4_3722 are separated by 274 nucleotides
Pf1N1B4_3720 - Long-chain fatty acid transport protein, at 4,126,740 to 4,128,008
_3720
Pf1N1B4_3721 - FIG00956435: hypothetical protein, at 4,128,155 to 4,128,637
_3721
Pf1N1B4_3722 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,128,912 to 4,129,136
_3722
Position (kb)
4128
4129
4130 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4127.998 kb on - strand at 4128.012 kb on + strand at 4128.013 kb on - strand at 4128.044 kb on - strand at 4128.435 kb on + strand, within Pf1N1B4_3721 at 4128.435 kb on + strand, within Pf1N1B4_3721 at 4128.436 kb on - strand, within Pf1N1B4_3721 at 4128.583 kb on - strand, within Pf1N1B4_3721 at 4128.606 kb on + strand at 4128.668 kb on + strand at 4128.753 kb on - strand at 4128.753 kb on - strand at 4128.936 kb on - strand, within Pf1N1B4_3722 at 4128.974 kb on - strand, within Pf1N1B4_3722 at 4128.999 kb on - strand, within Pf1N1B4_3722 at 4128.999 kb on - strand, within Pf1N1B4_3722 at 4129.136 kb on + strand at 4129.136 kb on + strand at 4129.136 kb on + strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.137 kb on - strand at 4129.149 kb on + strand at 4129.150 kb on - strand at 4129.150 kb on - strand at 4129.182 kb on - strand at 4129.182 kb on - strand at 4129.288 kb on - strand at 4129.288 kb on - strand at 4129.288 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.292 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.296 kb on - strand at 4129.381 kb on - strand at 4129.381 kb on - strand at 4129.381 kb on - strand at 4129.543 kb on + strand at 4129.544 kb on - strand at 4129.544 kb on - strand at 4130.031 kb on - strand at 4130.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,127,998 - +0.8 4,128,012 + +0.1 4,128,013 - +0.8 4,128,044 - -2.0 4,128,435 + Pf1N1B4_3721 0.58 +0.8 4,128,435 + Pf1N1B4_3721 0.58 +1.5 4,128,436 - Pf1N1B4_3721 0.58 +2.2 4,128,583 - Pf1N1B4_3721 0.89 -0.2 4,128,606 + -0.8 4,128,668 + -1.8 4,128,753 - +2.4 4,128,753 - +0.2 4,128,936 - Pf1N1B4_3722 0.11 -0.3 4,128,974 - Pf1N1B4_3722 0.28 -0.3 4,128,999 - Pf1N1B4_3722 0.39 -0.5 4,128,999 - Pf1N1B4_3722 0.39 -0.7 4,129,136 + -0.4 4,129,136 + -0.2 4,129,136 + -0.2 4,129,137 - -0.6 4,129,137 - +0.5 4,129,137 - +1.3 4,129,137 - -0.3 4,129,137 - +0.1 4,129,137 - -2.5 4,129,137 - -0.1 4,129,137 - +0.0 4,129,149 + -0.5 4,129,150 - +0.1 4,129,150 - -0.8 4,129,182 - +0.1 4,129,182 - +0.2 4,129,288 - +0.2 4,129,288 - -1.8 4,129,288 - +0.1 4,129,292 - +0.8 4,129,292 - +0.3 4,129,292 - -0.6 4,129,292 - +0.2 4,129,292 - +0.8 4,129,292 - -1.5 4,129,292 - -0.6 4,129,292 - +0.0 4,129,292 - -0.8 4,129,292 - +1.2 4,129,296 - +0.8 4,129,296 - +0.6 4,129,296 - +0.1 4,129,296 - +1.7 4,129,296 - +0.1 4,129,296 - +0.7 4,129,296 - -0.4 4,129,296 - +0.6 4,129,296 - -0.6 4,129,296 - -0.8 4,129,296 - +0.4 4,129,381 - +1.1 4,129,381 - +0.3 4,129,381 - -1.0 4,129,543 + +0.2 4,129,544 - -0.1 4,129,544 - +0.8 4,130,031 - -1.2 4,130,081 - -0.9
Or see this region's nucleotide sequence