Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18755 and HSERO_RS18760 are separated by 8 nucleotides HSERO_RS18760 and HSERO_RS18765 are separated by 66 nucleotides HSERO_RS18765 and HSERO_RS18770 are separated by 14 nucleotides HSERO_RS18770 and HSERO_RS18775 overlap by 4 nucleotides
HSERO_RS18755: HSERO_RS18755 - choline dehydrogenase, at 4,304,641 to 4,306,272
_RS18755
HSERO_RS18760: HSERO_RS18760 - cytochrome C, at 4,306,281 to 4,307,780
_RS18760
HSERO_RS18765: HSERO_RS18765 - hypothetical protein, at 4,307,847 to 4,308,050
_RS18765
HSERO_RS18770: HSERO_RS18770 - transcriptional regulator, at 4,308,065 to 4,308,292
_RS18770
HSERO_RS18775: HSERO_RS18775 - phage killer protein, at 4,308,289 to 4,308,672
_RS18775
Position (kb) 4306
4307
4308 Strain fitness (log2 ratio) -2
-1
0
1 at 4305.357 kb on + strand, within HSERO_RS18755 at 4305.613 kb on + strand, within HSERO_RS18755 at 4305.616 kb on - strand, within HSERO_RS18755 at 4305.628 kb on - strand, within HSERO_RS18755 at 4305.628 kb on - strand, within HSERO_RS18755 at 4305.634 kb on - strand, within HSERO_RS18755 at 4305.692 kb on - strand, within HSERO_RS18755 at 4305.783 kb on + strand, within HSERO_RS18755 at 4306.017 kb on + strand, within HSERO_RS18755 at 4306.025 kb on - strand, within HSERO_RS18755 at 4306.035 kb on + strand, within HSERO_RS18755 at 4306.071 kb on + strand, within HSERO_RS18755 at 4306.159 kb on - strand at 4306.189 kb on + strand at 4306.209 kb on - strand at 4306.275 kb on - strand at 4306.402 kb on + strand at 4306.663 kb on - strand, within HSERO_RS18760 at 4306.678 kb on - strand, within HSERO_RS18760 at 4306.678 kb on - strand, within HSERO_RS18760 at 4306.697 kb on - strand at 4306.724 kb on - strand, within HSERO_RS18760 at 4306.736 kb on + strand, within HSERO_RS18760 at 4307.254 kb on - strand, within HSERO_RS18760 at 4307.254 kb on - strand, within HSERO_RS18760 at 4307.347 kb on + strand, within HSERO_RS18760 at 4307.367 kb on + strand, within HSERO_RS18760 at 4307.367 kb on + strand, within HSERO_RS18760 at 4307.440 kb on + strand, within HSERO_RS18760 at 4307.562 kb on + strand, within HSERO_RS18760 at 4307.585 kb on + strand, within HSERO_RS18760 at 4307.732 kb on + strand at 4307.849 kb on + strand at 4307.875 kb on + strand, within HSERO_RS18765 at 4307.881 kb on + strand, within HSERO_RS18765 at 4308.159 kb on + strand, within HSERO_RS18770 at 4308.159 kb on + strand, within HSERO_RS18770 at 4308.167 kb on - strand, within HSERO_RS18770 at 4308.167 kb on - strand, within HSERO_RS18770 at 4308.378 kb on + strand, within HSERO_RS18775 at 4308.378 kb on + strand, within HSERO_RS18775 at 4308.466 kb on + strand, within HSERO_RS18775 at 4308.493 kb on + strand, within HSERO_RS18775 at 4308.499 kb on - strand, within HSERO_RS18775 at 4308.516 kb on - strand, within HSERO_RS18775 at 4308.553 kb on - strand at 4308.650 kb on + strand at 4308.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,305,357 + HSERO_RS18755 0.44 -0.5 4,305,613 + HSERO_RS18755 0.60 -1.6 4,305,616 - HSERO_RS18755 0.60 -0.0 4,305,628 - HSERO_RS18755 0.60 +0.2 4,305,628 - HSERO_RS18755 0.60 +0.9 4,305,634 - HSERO_RS18755 0.61 +0.1 4,305,692 - HSERO_RS18755 0.64 -0.5 4,305,783 + HSERO_RS18755 0.70 +0.7 4,306,017 + HSERO_RS18755 0.84 +1.1 4,306,025 - HSERO_RS18755 0.85 -1.4 4,306,035 + HSERO_RS18755 0.85 -0.2 4,306,071 + HSERO_RS18755 0.88 -0.9 4,306,159 - -0.2 4,306,189 + -0.4 4,306,209 - -0.5 4,306,275 - -0.4 4,306,402 + -0.0 4,306,663 - HSERO_RS18760 0.25 -0.0 4,306,678 - HSERO_RS18760 0.26 -0.5 4,306,678 - HSERO_RS18760 0.26 +0.1 4,306,697 - -0.5 4,306,724 - HSERO_RS18760 0.30 +0.1 4,306,736 + HSERO_RS18760 0.30 +0.5 4,307,254 - HSERO_RS18760 0.65 +0.2 4,307,254 - HSERO_RS18760 0.65 +0.6 4,307,347 + HSERO_RS18760 0.71 -0.2 4,307,367 + HSERO_RS18760 0.72 +0.7 4,307,367 + HSERO_RS18760 0.72 +1.3 4,307,440 + HSERO_RS18760 0.77 +0.1 4,307,562 + HSERO_RS18760 0.85 +0.5 4,307,585 + HSERO_RS18760 0.87 +0.3 4,307,732 + +0.7 4,307,849 + -0.1 4,307,875 + HSERO_RS18765 0.14 +0.2 4,307,881 + HSERO_RS18765 0.17 +0.3 4,308,159 + HSERO_RS18770 0.41 +0.5 4,308,159 + HSERO_RS18770 0.41 +0.5 4,308,167 - HSERO_RS18770 0.45 -0.4 4,308,167 - HSERO_RS18770 0.45 +0.3 4,308,378 + HSERO_RS18775 0.23 +0.5 4,308,378 + HSERO_RS18775 0.23 -0.1 4,308,466 + HSERO_RS18775 0.46 +1.1 4,308,493 + HSERO_RS18775 0.53 -0.6 4,308,499 - HSERO_RS18775 0.55 -1.9 4,308,516 - HSERO_RS18775 0.59 +0.7 4,308,553 - -0.2 4,308,650 + -0.3 4,308,734 - -0.4
Or see this region's nucleotide sequence