Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01830 and HSERO_RS01835 are separated by 86 nucleotides HSERO_RS01835 and HSERO_RS01840 are separated by 356 nucleotides HSERO_RS01840 and HSERO_RS01845 overlap by 2 nucleotides HSERO_RS01845 and HSERO_RS01850 are separated by 381 nucleotides
HSERO_RS01830: HSERO_RS01830 - prolyl-tRNA synthetase, at 402,729 to 404,456
_RS01830
HSERO_RS01835: HSERO_RS01835 - hypothetical protein, at 404,543 to 404,956
_RS01835
HSERO_RS01840: HSERO_RS01840 - hypothetical protein, at 405,313 to 405,543
_RS01840
HSERO_RS01845: HSERO_RS01845 - hypothetical protein, at 405,542 to 405,844
_RS01845
HSERO_RS01850: HSERO_RS01850 - signal recognition particle protein, at 406,226 to 407,596
_RS01850
Position (kb) 405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 404.746 kb on + strand, within HSERO_RS01835 at 404.882 kb on - strand, within HSERO_RS01835 at 405.068 kb on - strand at 405.106 kb on - strand at 405.228 kb on - strand at 405.316 kb on + strand at 405.324 kb on - strand at 405.713 kb on + strand, within HSERO_RS01845 at 405.735 kb on - strand, within HSERO_RS01845 at 406.089 kb on - strand at 406.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 404,746 + HSERO_RS01835 0.49 +0.5 404,882 - HSERO_RS01835 0.82 +1.9 405,068 - +0.6 405,106 - -0.1 405,228 - +1.0 405,316 + -1.0 405,324 - -1.8 405,713 + HSERO_RS01845 0.56 -1.0 405,735 - HSERO_RS01845 0.64 +0.0 406,089 - +0.2 406,153 + +0.7
Or see this region's nucleotide sequence