Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03818

Experiment: PYE with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03816 and CCNA_03817 are separated by 125 nucleotidesCCNA_03817 and CCNA_03818 overlap by 4 nucleotidesCCNA_03818 and CCNA_03819 are separated by 735 nucleotides CCNA_03816: CCNA_03816 - peptidyl-dipeptidase DCP, at 3,979,685 to 3,981,811 _03816 CCNA_03817: CCNA_03817 - glutamate racemase, at 3,981,937 to 3,982,785 _03817 CCNA_03818: CCNA_03818 - hypothetical protein, at 3,982,782 to 3,983,132 _03818 CCNA_03819: CCNA_03819 - cell division protein FtsK, at 3,983,868 to 3,986,345 _03819 Position (kb) 3982 3983 3984Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3981.796 kb on + strandat 3981.798 kb on + strandat 3981.798 kb on + strandat 3981.808 kb on + strandat 3981.816 kb on - strandat 3981.843 kb on + strandat 3981.844 kb on - strandat 3981.851 kb on - strandat 3981.851 kb on - strandat 3981.879 kb on - strandat 3981.888 kb on + strandat 3981.888 kb on + strandat 3981.888 kb on - strandat 3981.896 kb on + strandat 3981.913 kb on + strandat 3981.927 kb on + strandat 3981.966 kb on - strandat 3981.976 kb on + strandat 3982.014 kb on + strandat 3982.038 kb on - strand, within CCNA_03817at 3982.043 kb on - strand, within CCNA_03817at 3982.043 kb on - strand, within CCNA_03817at 3982.052 kb on - strand, within CCNA_03817at 3982.091 kb on - strand, within CCNA_03817at 3982.091 kb on - strand, within CCNA_03817at 3982.118 kb on + strand, within CCNA_03817at 3982.126 kb on - strand, within CCNA_03817at 3982.126 kb on - strand, within CCNA_03817at 3982.132 kb on + strand, within CCNA_03817at 3982.140 kb on - strand, within CCNA_03817at 3982.158 kb on - strand, within CCNA_03817at 3982.296 kb on - strand, within CCNA_03817at 3982.309 kb on + strand, within CCNA_03817at 3982.309 kb on + strand, within CCNA_03817at 3982.317 kb on - strand, within CCNA_03817at 3982.419 kb on + strand, within CCNA_03817at 3982.424 kb on + strand, within CCNA_03817at 3982.424 kb on + strand, within CCNA_03817at 3982.432 kb on - strand, within CCNA_03817at 3982.432 kb on - strand, within CCNA_03817at 3982.437 kb on - strand, within CCNA_03817at 3982.486 kb on - strand, within CCNA_03817at 3982.491 kb on - strand, within CCNA_03817at 3982.504 kb on + strand, within CCNA_03817at 3982.540 kb on + strand, within CCNA_03817at 3982.540 kb on + strand, within CCNA_03817at 3982.548 kb on - strand, within CCNA_03817at 3982.548 kb on - strand, within CCNA_03817at 3982.548 kb on - strand, within CCNA_03817at 3982.548 kb on - strand, within CCNA_03817at 3982.553 kb on - strand, within CCNA_03817at 3982.578 kb on + strand, within CCNA_03817at 3982.660 kb on - strand, within CCNA_03817at 3982.736 kb on + strandat 3982.757 kb on - strandat 3982.780 kb on + strandat 3982.793 kb on - strandat 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3983.070 kb on - strand, within CCNA_03818at 3983.082 kb on + strand, within CCNA_03818at 3983.089 kb on - strand, within CCNA_03818at 3983.090 kb on - strand, within CCNA_03818at 3983.104 kb on + strandat 3983.112 kb on - strandat 3983.112 kb on - strandat 3983.116 kb on + strandat 3983.116 kb on + strandat 3983.116 kb on + strandat 3983.116 kb on + strandat 3983.130 kb on - strandat 3983.139 kb on + strandat 3983.147 kb on - strandat 3983.149 kb on + strandat 3983.152 kb on - strandat 3983.154 kb on + strandat 3983.157 kb on - strandat 3983.162 kb on - strandat 3983.162 kb on - strandat 3983.241 kb on + strandat 3983.274 kb on + strandat 3983.288 kb on - strandat 3983.305 kb on - strandat 3983.322 kb on - strandat 3983.490 kb on + strandat 3983.490 kb on + strandat 3983.490 kb on + strandat 3983.545 kb on - strandat 3983.550 kb on + strandat 3983.560 kb on + strandat 3983.560 kb on + strandat 3983.567 kb on - strandat 3983.568 kb on - strandat 3983.568 kb on - strandat 3983.568 kb on - strandat 3983.580 kb on + strandat 3983.592 kb on - strandat 3983.670 kb on - strandat 3983.671 kb on - strandat 3983.686 kb on - strandat 3983.754 kb on + strandat 3983.754 kb on + strandat 3983.756 kb on + strandat 3983.766 kb on + strandat 3983.766 kb on + strandat 3983.774 kb on - strandat 3983.790 kb on + strandat 3983.798 kb on - strandat 3983.802 kb on + strandat 3983.808 kb on - strandat 3983.843 kb on - strandat 3983.848 kb on - strandat 3983.848 kb on - strandat 3983.850 kb on + strandat 3983.850 kb on + strandat 3983.850 kb on + strandat 3983.850 kb on + strandat 3983.858 kb on - strandat 3983.858 kb on - strandat 3983.860 kb on + strandat 3983.921 kb on + strandat 3983.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml
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3,981,796 + -0.7
3,981,798 + +0.2
3,981,798 + -2.2
3,981,808 + -1.5
3,981,816 - +0.8
3,981,843 + -1.2
3,981,844 - -0.9
3,981,851 - +0.2
3,981,851 - +1.0
3,981,879 - -1.9
3,981,888 + -3.0
3,981,888 + +2.4
3,981,888 - +1.1
3,981,896 + -0.8
3,981,913 + -1.5
3,981,927 + +0.5
3,981,966 - -0.6
3,981,976 + +1.1
3,982,014 + -1.5
3,982,038 - CCNA_03817 0.12 -1.9
3,982,043 - CCNA_03817 0.12 -0.5
3,982,043 - CCNA_03817 0.12 -0.8
3,982,052 - CCNA_03817 0.14 -2.0
3,982,091 - CCNA_03817 0.18 -1.1
3,982,091 - CCNA_03817 0.18 -0.2
3,982,118 + CCNA_03817 0.21 -1.4
3,982,126 - CCNA_03817 0.22 -2.2
3,982,126 - CCNA_03817 0.22 -2.2
3,982,132 + CCNA_03817 0.23 -0.6
3,982,140 - CCNA_03817 0.24 -1.4
3,982,158 - CCNA_03817 0.26 +0.2
3,982,296 - CCNA_03817 0.42 -1.7
3,982,309 + CCNA_03817 0.44 -1.0
3,982,309 + CCNA_03817 0.44 -0.3
3,982,317 - CCNA_03817 0.45 -1.1
3,982,419 + CCNA_03817 0.57 -0.5
3,982,424 + CCNA_03817 0.57 -0.6
3,982,424 + CCNA_03817 0.57 -2.9
3,982,432 - CCNA_03817 0.58 +0.2
3,982,432 - CCNA_03817 0.58 -1.2
3,982,437 - CCNA_03817 0.59 -1.0
3,982,486 - CCNA_03817 0.65 -1.4
3,982,491 - CCNA_03817 0.65 -1.4
3,982,504 + CCNA_03817 0.67 -1.1
3,982,540 + CCNA_03817 0.71 -1.8
3,982,540 + CCNA_03817 0.71 -0.6
3,982,548 - CCNA_03817 0.72 -1.5
3,982,548 - CCNA_03817 0.72 +0.0
3,982,548 - CCNA_03817 0.72 -0.8
3,982,548 - CCNA_03817 0.72 -1.9
3,982,553 - CCNA_03817 0.73 -2.4
3,982,578 + CCNA_03817 0.76 -2.4
3,982,660 - CCNA_03817 0.85 -0.6
3,982,736 + -0.1
3,982,757 - -1.9
3,982,780 + +0.9
3,982,793 - +0.0
3,982,973 + CCNA_03818 0.54 +0.8
3,982,973 + CCNA_03818 0.54 +0.8
3,982,973 + CCNA_03818 0.54 -0.3
3,982,973 + CCNA_03818 0.54 +0.2
3,982,973 + CCNA_03818 0.54 +1.2
3,982,973 + CCNA_03818 0.54 -0.1
3,983,070 - CCNA_03818 0.82 -0.2
3,983,082 + CCNA_03818 0.85 +0.2
3,983,089 - CCNA_03818 0.87 -1.5
3,983,090 - CCNA_03818 0.88 +0.4
3,983,104 + -0.8
3,983,112 - +0.4
3,983,112 - -1.1
3,983,116 + -0.1
3,983,116 + -0.9
3,983,116 + +3.9
3,983,116 + +1.1
3,983,130 - +1.3
3,983,139 + -0.2
3,983,147 - -0.8
3,983,149 + -0.5
3,983,152 - +1.3
3,983,154 + +0.9
3,983,157 - -2.1
3,983,162 - -0.1
3,983,162 - -0.8
3,983,241 + +0.0
3,983,274 + -1.8
3,983,288 - -1.6
3,983,305 - -2.2
3,983,322 - -3.8
3,983,490 + -1.1
3,983,490 + -1.9
3,983,490 + -2.6
3,983,545 - -2.0
3,983,550 + +1.6
3,983,560 + +0.8
3,983,560 + -0.5
3,983,567 - +1.4
3,983,568 - -0.1
3,983,568 - +0.6
3,983,568 - +0.6
3,983,580 + +0.3
3,983,592 - -1.1
3,983,670 - +0.8
3,983,671 - -1.0
3,983,686 - +0.2
3,983,754 + -0.5
3,983,754 + -1.2
3,983,756 + -1.4
3,983,766 + -0.4
3,983,766 + -1.6
3,983,774 - -1.7
3,983,790 + -2.9
3,983,798 - -0.6
3,983,802 + -0.5
3,983,808 - -1.6
3,983,843 - -2.0
3,983,848 - -1.6
3,983,848 - -2.3
3,983,850 + +0.5
3,983,850 + -0.1
3,983,850 + +0.5
3,983,850 + +0.3
3,983,858 - -0.9
3,983,858 - -1.3
3,983,860 + -1.6
3,983,921 + -0.4
3,983,921 + -1.9

Or see this region's nucleotide sequence