Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03775

Experiment: PYE with Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Cisplatin 0.005 mg/ml
3,941,568	+				-1.4
3,941,577	-				+1.0
3,941,630	+				+1.4
3,941,656	+		CCNA_03774	0.17	-1.0
3,941,656	+		CCNA_03774	0.17	+0.7
3,941,656	+		CCNA_03774	0.17	-1.9
3,941,656	+		CCNA_03774	0.17	-2.9
3,941,656	+		CCNA_03774	0.17	-2.4
3,941,664	-		CCNA_03774	0.18	+0.1
3,941,664	-		CCNA_03774	0.18	+0.2
3,941,664	-		CCNA_03774	0.18	+0.2
3,941,680	+		CCNA_03774	0.20	+0.9
3,941,722	+		CCNA_03774	0.25	-1.1
3,941,730	-		CCNA_03774	0.26	-0.2
3,941,771	+		CCNA_03774	0.30	+0.2
3,941,773	+		CCNA_03774	0.30	+0.8
3,941,779	-		CCNA_03774	0.31	+0.4
3,941,780	+		CCNA_03774	0.31	-0.4
3,941,780	-		CCNA_03774	0.31	+0.2
3,941,796	-		CCNA_03774	0.33	+0.8
3,941,865	-		CCNA_03774	0.41	-1.6
3,941,918	-		CCNA_03774	0.47	+1.4
3,941,951	+		CCNA_03774	0.50	-0.8
3,941,957	-		CCNA_03774	0.51	+0.9
3,942,005	+		CCNA_03774	0.57	-2.0
3,942,017	+		CCNA_03774	0.58	-0.4
3,942,025	-		CCNA_03774	0.59	+0.4
3,942,029	+		CCNA_03774	0.59	-2.0
3,942,034	+		CCNA_03774	0.60	+0.3
3,942,037	-		CCNA_03774	0.60	+0.2
3,942,037	-		CCNA_03774	0.60	+0.4
3,942,042	-		CCNA_03774	0.61	-0.9
3,942,044	+		CCNA_03774	0.61	-1.9
3,942,051	+		CCNA_03774	0.62	-1.6
3,942,051	+		CCNA_03774	0.62	+0.4
3,942,067	-		CCNA_03774	0.64	-2.0
3,942,074	-		CCNA_03774	0.64	-0.6
3,942,091	-		CCNA_03774	0.66	+0.0
3,942,091	-		CCNA_03774	0.66	+0.5
3,942,110	-		CCNA_03774	0.68	+0.6
3,942,116	-		CCNA_03774	0.69	+0.1
3,942,186	-		CCNA_03774	0.77	+2.2
3,942,195	+		CCNA_03774	0.78	+0.6
3,942,274	-		CCNA_03774	0.87	+0.4
3,942,277	+		CCNA_03774	0.87	-1.4
3,942,323	+				-0.8
3,942,341	+				-1.9
3,942,343	+				-2.4
3,942,349	-				-0.5
3,942,349	-				+0.0
3,942,349	-				-0.0
3,942,351	-				+0.1
3,942,351	-				-2.9
3,942,354	-				-0.3
3,942,406	-				-1.3
3,942,416	-				+0.5
3,942,416	-				-0.3
3,942,416	-				+0.2
3,942,420	+				-2.4
3,942,420	+				+0.5
3,942,425	+				-2.7
3,942,428	-				+0.8
3,942,428	-				+0.5
3,942,428	-				-0.2
3,942,435	-				+0.3
3,942,435	-				-1.0
3,942,515	+				-2.6
3,942,515	+				-2.2
3,942,518	-				+0.5
3,942,521	+				-1.7
3,942,521	+				-0.7
3,942,625	+		CCNA_03775	0.26	-2.5
3,942,649	-		CCNA_03775	0.32	-1.5
3,942,654	-		CCNA_03775	0.34	-2.0
3,942,698	+		CCNA_03775	0.45	+0.7
3,942,698	+		CCNA_03775	0.45	-2.2
3,942,698	+		CCNA_03775	0.45	-2.9
3,942,712	+		CCNA_03775	0.49	-0.3
3,942,712	+		CCNA_03775	0.49	-0.8
3,942,712	+		CCNA_03775	0.49	-2.3
3,942,713	-		CCNA_03775	0.49	-0.3
3,942,713	-		CCNA_03775	0.49	-0.8
3,942,713	-		CCNA_03775	0.49	-0.2
3,942,718	-		CCNA_03775	0.50	-1.2
3,942,720	-		CCNA_03775	0.51	-1.6
3,942,733	+		CCNA_03775	0.54	-0.9
3,942,733	+		CCNA_03775	0.54	+0.9
3,942,733	+		CCNA_03775	0.54	-0.9
3,942,741	-		CCNA_03775	0.56	-3.0
3,942,741	-		CCNA_03775	0.56	+1.9
3,942,741	-		CCNA_03775	0.56	-2.1
3,942,746	-		CCNA_03775	0.58	-0.1
3,942,772	+		CCNA_03775	0.64	+0.0
3,942,794	+		CCNA_03775	0.70	-0.8
3,942,802	-		CCNA_03775	0.72	-1.2
3,942,802	-		CCNA_03775	0.72	-0.2
3,942,812	+		CCNA_03775	0.75	+0.9
3,942,910	-				-0.5
3,942,946	+				-1.3
3,942,970	+		CCNA_03776	0.11	-0.2
3,942,982	-		CCNA_03776	0.14	-2.3
3,943,003	-		CCNA_03776	0.17	-2.1
3,943,021	+		CCNA_03776	0.21	-2.3
3,943,027	-		CCNA_03776	0.22	-0.7
3,943,047	-		CCNA_03776	0.26	-1.5
3,943,064	+		CCNA_03776	0.29	-0.2
3,943,074	+		CCNA_03776	0.31	-3.3
3,943,082	-		CCNA_03776	0.32	-2.4
3,943,093	+		CCNA_03776	0.34	-1.6
3,943,093	+		CCNA_03776	0.34	-3.0
3,943,093	+		CCNA_03776	0.34	-1.9
3,943,098	-		CCNA_03776	0.35	+0.1
3,943,099	-		CCNA_03776	0.35	-0.4
3,943,184	+		CCNA_03776	0.51	-1.9
3,943,184	-		CCNA_03776	0.51	-1.5
3,943,206	-		CCNA_03776	0.55	-0.4
3,943,229	-		CCNA_03776	0.59	-0.7
3,943,231	+		CCNA_03776	0.60	-2.1
3,943,234	-		CCNA_03776	0.60	+0.4
3,943,234	-		CCNA_03776	0.60	-0.5
3,943,234	-		CCNA_03776	0.60	-0.9
3,943,234	-		CCNA_03776	0.60	-1.3
3,943,244	-		CCNA_03776	0.62	-1.0
3,943,244	-		CCNA_03776	0.62	-0.1
3,943,266	+		CCNA_03776	0.66	-1.4
3,943,274	-		CCNA_03776	0.68	-0.3
3,943,274	-		CCNA_03776	0.68	+0.0
3,943,326	+		CCNA_03776	0.77	-2.8
3,943,326	+		CCNA_03776	0.77	-0.8
3,943,326	+		CCNA_03776	0.77	-2.4
3,943,326	+		CCNA_03776	0.77	-2.2
3,943,331	+		CCNA_03776	0.78	-2.3
3,943,334	-		CCNA_03776	0.79	-0.2
3,943,334	-		CCNA_03776	0.79	-1.6
3,943,346	+		CCNA_03776	0.81	-1.8
3,943,377	-		CCNA_03776	0.87	-0.9
3,943,472	+				-1.1
3,943,472	+				-2.0
3,943,496	-				+1.9
3,943,505	+				-1.4
3,943,505	+				-3.5
3,943,522	+				-0.6
3,943,553	+				-0.0
3,943,641	+		CCNA_03777	0.17	-0.5
3,943,662	-		CCNA_03777	0.19	-0.3
3,943,665	+		CCNA_03777	0.19	-1.4
3,943,665	+		CCNA_03777	0.19	-0.8
3,943,665	+		CCNA_03777	0.19	+0.4
3,943,668	-		CCNA_03777	0.20	-2.3
3,943,668	-		CCNA_03777	0.20	+0.1
3,943,673	-		CCNA_03777	0.20	+0.4
3,943,686	+		CCNA_03777	0.21	-0.8
3,943,721	+		CCNA_03777	0.25	-0.1
3,943,723	+		CCNA_03777	0.25	-2.6
3,943,729	-		CCNA_03777	0.25	-1.0
3,943,729	-		CCNA_03777	0.25	-1.2
3,943,729	-		CCNA_03777	0.25	+0.8
3,943,747	+		CCNA_03777	0.27	-0.5
3,943,768	-		CCNA_03777	0.29	-2.4
3,943,770	-		CCNA_03777	0.29	-0.6
3,943,787	+		CCNA_03777	0.31	-1.1
3,943,792	+		CCNA_03777	0.31	-0.6
3,943,800	-		CCNA_03777	0.32	-0.4
3,943,870	+		CCNA_03777	0.39	-1.4
3,943,878	-		CCNA_03777	0.40	-0.8
3,943,883	-		CCNA_03777	0.40	+1.7
3,943,883	-		CCNA_03777	0.40	-0.7
3,943,884	-		CCNA_03777	0.40	+0.5