Experiment: PYE with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03338 and CCNA_03339 overlap by 4 nucleotides CCNA_03339 and CCNA_03340 are separated by 7 nucleotides CCNA_03340 and CCNA_03341 are separated by 4 nucleotides CCNA_03341 and CCNA_03342 are separated by 114 nucleotides
CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734
_03338
CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543
_03339
CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069
_03340
CCNA_03341: CCNA_03341 - TolQ protein, at 3,522,074 to 3,522,772
_03341
CCNA_03342: CCNA_03342 - short-chain acyl-CoA hydrolase, at 3,522,887 to 3,523,330
_03342
Position (kb)
3521
3522
3523 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3520.688 kb on + strand at 3520.688 kb on + strand at 3520.696 kb on - strand at 3520.696 kb on - strand at 3520.696 kb on - strand at 3521.509 kb on + strand at 3521.574 kb on - strand at 3521.587 kb on - strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.095 kb on + strand at 3522.785 kb on + strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.803 kb on - strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.809 kb on + strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.824 kb on - strand at 3522.893 kb on - strand at 3522.918 kb on + strand at 3522.918 kb on + strand at 3522.920 kb on - strand at 3522.932 kb on + strand, within CCNA_03342 at 3522.960 kb on - strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.990 kb on + strand, within CCNA_03342 at 3522.998 kb on - strand, within CCNA_03342 at 3523.003 kb on + strand, within CCNA_03342 at 3523.003 kb on - strand, within CCNA_03342 at 3523.011 kb on - strand, within CCNA_03342 at 3523.056 kb on + strand, within CCNA_03342
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml remove 3,520,688 + -2.5 3,520,688 + +0.8 3,520,696 - +1.0 3,520,696 - -1.9 3,520,696 - +0.2 3,521,509 + -1.2 3,521,574 - +0.6 3,521,587 - -1.2 3,522,072 + -0.4 3,522,072 + +0.7 3,522,072 + -0.3 3,522,072 + -0.8 3,522,072 + -1.2 3,522,072 + +0.2 3,522,072 + +0.6 3,522,072 + -0.9 3,522,072 + -0.4 3,522,072 + +0.6 3,522,072 + -2.2 3,522,080 - +0.6 3,522,080 - +0.3 3,522,080 - +0.7 3,522,080 - +0.3 3,522,080 - +1.0 3,522,080 - +0.8 3,522,080 - +0.8 3,522,080 - +1.3 3,522,080 - +0.1 3,522,080 - +0.6 3,522,080 - +0.7 3,522,095 + -0.6 3,522,785 + -1.3 3,522,793 - -0.8 3,522,793 - +0.6 3,522,793 - +0.8 3,522,793 - -2.0 3,522,803 - +1.0 3,522,804 + -1.8 3,522,804 + -1.0 3,522,804 + +0.2 3,522,804 + -2.3 3,522,809 + -0.9 3,522,812 - -2.6 3,522,812 - -0.2 3,522,812 - -0.0 3,522,812 - -0.4 3,522,812 - +0.2 3,522,812 - -1.4 3,522,812 - +0.0 3,522,812 - -1.8 3,522,812 - +0.7 3,522,812 - -0.6 3,522,812 - +0.7 3,522,812 - -0.0 3,522,812 - +0.0 3,522,824 - +2.1 3,522,893 - +0.1 3,522,918 + -2.2 3,522,918 + -0.5 3,522,920 - -0.5 3,522,932 + CCNA_03342 0.10 -0.4 3,522,960 - CCNA_03342 0.16 +2.1 3,522,964 + CCNA_03342 0.17 -0.5 3,522,964 + CCNA_03342 0.17 +1.2 3,522,964 + CCNA_03342 0.17 -0.6 3,522,972 - CCNA_03342 0.19 +1.2 3,522,972 - CCNA_03342 0.19 -0.4 3,522,972 - CCNA_03342 0.19 -0.8 3,522,972 - CCNA_03342 0.19 -0.5 3,522,990 + CCNA_03342 0.23 -0.9 3,522,998 - CCNA_03342 0.25 +0.8 3,523,003 + CCNA_03342 0.26 -2.2 3,523,003 - CCNA_03342 0.26 -1.7 3,523,011 - CCNA_03342 0.28 +2.1 3,523,056 + CCNA_03342 0.38 +0.2
Or see this region's nucleotide sequence