Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03340

Experiment: PYE with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03338 and CCNA_03339 overlap by 4 nucleotidesCCNA_03339 and CCNA_03340 are separated by 7 nucleotidesCCNA_03340 and CCNA_03341 are separated by 4 nucleotidesCCNA_03341 and CCNA_03342 are separated by 114 nucleotides CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734 _03338 CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543 _03339 CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069 _03340 CCNA_03341: CCNA_03341 - TolQ protein, at 3,522,074 to 3,522,772 _03341 CCNA_03342: CCNA_03342 - short-chain acyl-CoA hydrolase, at 3,522,887 to 3,523,330 _03342 Position (kb) 3521 3522 3523Strain fitness (log2 ratio) -2 -1 0 1 2at 3520.688 kb on + strandat 3520.688 kb on + strandat 3520.696 kb on - strandat 3520.696 kb on - strandat 3520.696 kb on - strandat 3521.509 kb on + strandat 3521.574 kb on - strandat 3521.587 kb on - strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.072 kb on + strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.080 kb on - strandat 3522.095 kb on + strandat 3522.785 kb on + strandat 3522.793 kb on - strandat 3522.793 kb on - strandat 3522.793 kb on - strandat 3522.793 kb on - strandat 3522.803 kb on - strandat 3522.804 kb on + strandat 3522.804 kb on + strandat 3522.804 kb on + strandat 3522.804 kb on + strandat 3522.809 kb on + strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.812 kb on - strandat 3522.824 kb on - strandat 3522.893 kb on - strandat 3522.918 kb on + strandat 3522.918 kb on + strandat 3522.920 kb on - strandat 3522.932 kb on + strand, within CCNA_03342at 3522.960 kb on - strand, within CCNA_03342at 3522.964 kb on + strand, within CCNA_03342at 3522.964 kb on + strand, within CCNA_03342at 3522.964 kb on + strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.972 kb on - strand, within CCNA_03342at 3522.990 kb on + strand, within CCNA_03342at 3522.998 kb on - strand, within CCNA_03342at 3523.003 kb on + strand, within CCNA_03342at 3523.003 kb on - strand, within CCNA_03342at 3523.011 kb on - strand, within CCNA_03342at 3523.056 kb on + strand, within CCNA_03342

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml
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3,520,688 + -2.5
3,520,688 + +0.8
3,520,696 - +1.0
3,520,696 - -1.9
3,520,696 - +0.2
3,521,509 + -1.2
3,521,574 - +0.6
3,521,587 - -1.2
3,522,072 + -0.4
3,522,072 + +0.7
3,522,072 + -0.3
3,522,072 + -0.8
3,522,072 + -1.2
3,522,072 + +0.2
3,522,072 + +0.6
3,522,072 + -0.9
3,522,072 + -0.4
3,522,072 + +0.6
3,522,072 + -2.2
3,522,080 - +0.6
3,522,080 - +0.3
3,522,080 - +0.7
3,522,080 - +0.3
3,522,080 - +1.0
3,522,080 - +0.8
3,522,080 - +0.8
3,522,080 - +1.3
3,522,080 - +0.1
3,522,080 - +0.6
3,522,080 - +0.7
3,522,095 + -0.6
3,522,785 + -1.3
3,522,793 - -0.8
3,522,793 - +0.6
3,522,793 - +0.8
3,522,793 - -2.0
3,522,803 - +1.0
3,522,804 + -1.8
3,522,804 + -1.0
3,522,804 + +0.2
3,522,804 + -2.3
3,522,809 + -0.9
3,522,812 - -2.6
3,522,812 - -0.2
3,522,812 - -0.0
3,522,812 - -0.4
3,522,812 - +0.2
3,522,812 - -1.4
3,522,812 - +0.0
3,522,812 - -1.8
3,522,812 - +0.7
3,522,812 - -0.6
3,522,812 - +0.7
3,522,812 - -0.0
3,522,812 - +0.0
3,522,824 - +2.1
3,522,893 - +0.1
3,522,918 + -2.2
3,522,918 + -0.5
3,522,920 - -0.5
3,522,932 + CCNA_03342 0.10 -0.4
3,522,960 - CCNA_03342 0.16 +2.1
3,522,964 + CCNA_03342 0.17 -0.5
3,522,964 + CCNA_03342 0.17 +1.2
3,522,964 + CCNA_03342 0.17 -0.6
3,522,972 - CCNA_03342 0.19 +1.2
3,522,972 - CCNA_03342 0.19 -0.4
3,522,972 - CCNA_03342 0.19 -0.8
3,522,972 - CCNA_03342 0.19 -0.5
3,522,990 + CCNA_03342 0.23 -0.9
3,522,998 - CCNA_03342 0.25 +0.8
3,523,003 + CCNA_03342 0.26 -2.2
3,523,003 - CCNA_03342 0.26 -1.7
3,523,011 - CCNA_03342 0.28 +2.1
3,523,056 + CCNA_03342 0.38 +0.2

Or see this region's nucleotide sequence