Experiment: PYE with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01897 and CCNA_01898 overlap by 4 nucleotides CCNA_01898 and CCNA_01899 overlap by 4 nucleotides CCNA_01899 and CCNA_01900 overlap by 4 nucleotides CCNA_01900 and CCNA_01901 are separated by 107 nucleotides
CCNA_01897: CCNA_01897 - metal-dependent hydrolase, at 2,040,047 to 2,040,853
_01897
CCNA_01898: CCNA_01898 - Mg-dependent Dnase TatD, at 2,040,850 to 2,041,638
_01898
CCNA_01899: CCNA_01899 - DNA polymerase III, delta, at 2,041,635 to 2,042,645
_01899
CCNA_01900: CCNA_01900 - thymidylate kinase, at 2,042,642 to 2,043,268
_01900
CCNA_01901: CCNA_01901 - lipoprotein, at 2,043,376 to 2,044,365
_01901
Position (kb)
2041
2042
2043 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2040.644 kb on + strand, within CCNA_01897 at 2040.645 kb on - strand, within CCNA_01897 at 2040.677 kb on - strand, within CCNA_01897 at 2040.709 kb on + strand, within CCNA_01897 at 2040.714 kb on + strand, within CCNA_01897 at 2040.737 kb on + strand at 2040.752 kb on - strand, within CCNA_01897 at 2040.766 kb on + strand, within CCNA_01897 at 2040.766 kb on + strand, within CCNA_01897 at 2040.777 kb on + strand at 2040.782 kb on + strand at 2040.846 kb on + strand at 2040.859 kb on - strand at 2040.906 kb on - strand at 2040.911 kb on - strand at 2040.927 kb on - strand at 2041.016 kb on - strand, within CCNA_01898 at 2041.067 kb on - strand, within CCNA_01898 at 2041.099 kb on + strand, within CCNA_01898 at 2041.107 kb on - strand, within CCNA_01898 at 2041.107 kb on - strand, within CCNA_01898 at 2041.154 kb on - strand, within CCNA_01898 at 2041.160 kb on + strand, within CCNA_01898 at 2041.263 kb on + strand, within CCNA_01898 at 2041.283 kb on + strand, within CCNA_01898 at 2041.314 kb on - strand, within CCNA_01898 at 2041.350 kb on - strand, within CCNA_01898 at 2041.374 kb on - strand, within CCNA_01898 at 2041.406 kb on - strand, within CCNA_01898 at 2041.408 kb on + strand, within CCNA_01898 at 2041.413 kb on + strand, within CCNA_01898 at 2041.426 kb on - strand, within CCNA_01898 at 2041.496 kb on + strand, within CCNA_01898 at 2041.512 kb on - strand, within CCNA_01898 at 2041.512 kb on - strand, within CCNA_01898 at 2041.513 kb on - strand at 2041.574 kb on + strand at 2041.582 kb on - strand at 2041.588 kb on + strand at 2041.624 kb on - strand at 2041.640 kb on + strand at 2041.653 kb on - strand at 2041.678 kb on + strand at 2041.678 kb on + strand at 2043.390 kb on - strand at 2043.396 kb on + strand at 2043.406 kb on + strand at 2043.433 kb on + strand at 2043.434 kb on - strand at 2043.434 kb on - strand at 2043.434 kb on - strand at 2043.515 kb on - strand, within CCNA_01901 at 2043.588 kb on + strand, within CCNA_01901 at 2043.591 kb on - strand, within CCNA_01901 at 2043.619 kb on - strand, within CCNA_01901 at 2043.644 kb on + strand, within CCNA_01901
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml remove 2,040,644 + CCNA_01897 0.74 -0.3 2,040,645 - CCNA_01897 0.74 -1.4 2,040,677 - CCNA_01897 0.78 -2.5 2,040,709 + CCNA_01897 0.82 -2.1 2,040,714 + CCNA_01897 0.83 -1.2 2,040,737 + +1.3 2,040,752 - CCNA_01897 0.87 +0.5 2,040,766 + CCNA_01897 0.89 -1.2 2,040,766 + CCNA_01897 0.89 -0.7 2,040,777 + -2.2 2,040,782 + -1.2 2,040,846 + -1.9 2,040,859 - +0.4 2,040,906 - -0.3 2,040,911 - +0.6 2,040,927 - -0.6 2,041,016 - CCNA_01898 0.21 +0.8 2,041,067 - CCNA_01898 0.28 +0.4 2,041,099 + CCNA_01898 0.32 -0.8 2,041,107 - CCNA_01898 0.33 +0.3 2,041,107 - CCNA_01898 0.33 -1.2 2,041,154 - CCNA_01898 0.39 +1.2 2,041,160 + CCNA_01898 0.39 -0.8 2,041,263 + CCNA_01898 0.52 -1.4 2,041,283 + CCNA_01898 0.55 +0.4 2,041,314 - CCNA_01898 0.59 +0.8 2,041,350 - CCNA_01898 0.63 -0.3 2,041,374 - CCNA_01898 0.66 -2.5 2,041,406 - CCNA_01898 0.70 -3.3 2,041,408 + CCNA_01898 0.71 -0.1 2,041,413 + CCNA_01898 0.71 -1.3 2,041,426 - CCNA_01898 0.73 +0.2 2,041,496 + CCNA_01898 0.82 -1.4 2,041,512 - CCNA_01898 0.84 +0.7 2,041,512 - CCNA_01898 0.84 +0.7 2,041,513 - +0.1 2,041,574 + -0.4 2,041,582 - -2.4 2,041,588 + +1.6 2,041,624 - -1.8 2,041,640 + -2.1 2,041,653 - +0.7 2,041,678 + -0.7 2,041,678 + -0.3 2,043,390 - -0.5 2,043,396 + +0.2 2,043,406 + -1.6 2,043,433 + -2.1 2,043,434 - +1.3 2,043,434 - -1.5 2,043,434 - +1.4 2,043,515 - CCNA_01901 0.14 +0.2 2,043,588 + CCNA_01901 0.21 +0.3 2,043,591 - CCNA_01901 0.22 -0.0 2,043,619 - CCNA_01901 0.25 -1.5 2,043,644 + CCNA_01901 0.27 +0.9
Or see this region's nucleotide sequence